Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.44□□□□□ -0.1
RPUSD4Q96CM3 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 PRKY-204ENST00000533551 1019 ntBASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 AC092666.2-201ENST00000613287 246 ntBASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC14.43□□□□□ -0.1
RPUSD4Q96CM3 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 TSPY21P-201ENST00000433481 731 ntBASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 UNC93B4-201ENST00000505679 747 ntBASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 RGMA-211ENST00000557420 989 ntTSL 3 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms