Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 AL161772.1-201ENST00000610494 4412 ntBASIC11.32□□□□□ -0.6
LINC00643Q86TS7 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 STK4-201ENST00000372801 2038 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 METRNL-202ENST00000570778 967 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 FAM21FP-204ENST00000608637 956 ntBASIC11.31□□□□□ -0.6
LINC00643Q86TS7 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 AL009178.2-201ENST00000597278 2719 ntBASIC11.31□□□□□ -0.6
LINC00643Q86TS7 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 AC092068.3-201ENST00000587894 2016 ntBASIC11.31□□□□□ -0.6
LINC00643Q86TS7 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 OR2I1P-210ENST00000642037 4691 ntBASIC11.31□□□□□ -0.6
LINC00643Q86TS7 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 PHGDH-210ENST00000641115 1638 ntBASIC11.31□□□□□ -0.6
LINC00643Q86TS7 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC00643Q86TS7 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 CR559946.2-201ENST00000623684 991 ntBASIC11.3□□□□□ -0.6
LINC00643Q86TS7 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 MYC-208ENST00000641036 567 ntBASIC11.3□□□□□ -0.6
LINC00643Q86TS7 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 CICP13-201ENST00000422015 2789 ntBASIC11.3□□□□□ -0.6
LINC00643Q86TS7 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC11.3□□□□□ -0.6
LINC00643Q86TS7 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms