Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 HYMAI.1-201ENST00000620949 238 ntBASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 AL157888.1-201ENST00000631930 593 ntBASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
PTCHD3Q3KNS1 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 AC138028.4-201ENST00000564984 1845 ntBASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 RASA4DP-201ENST00000460726 1199 ntBASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 ZNF444P1-201ENST00000559497 298 ntBASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 AC093458.2-201ENST00000623150 629 ntBASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTCHD3Q3KNS1 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 HTR7P1-202ENST00000624664 4411 ntBASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 AC092597.1-201ENST00000487352 616 ntBASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 AC034232.1-201ENST00000506026 1064 ntBASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.71■□□□□ 0.43
PTCHD3Q3KNS1 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms