Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 RPS2P55-201ENST00000397318 883 ntBASIC13.9□□□□□ -0.18
HIST1H1AQ02539 SLC25A6P5-201ENST00000435663 894 ntBASIC13.9□□□□□ -0.18
HIST1H1AQ02539 GCSHP5-201ENST00000443090 522 ntBASIC13.9□□□□□ -0.18
HIST1H1AQ02539 MCCD1P1-208ENST00000445732 328 ntBASIC13.9□□□□□ -0.18
HIST1H1AQ02539 AC107956.1-201ENST00000494359 873 ntBASIC13.9□□□□□ -0.18
HIST1H1AQ02539 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 AC097488.1-201ENST00000507834 756 ntBASIC13.9□□□□□ -0.18
HIST1H1AQ02539 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 AC008556.1-201ENST00000610908 2040 ntBASIC13.9□□□□□ -0.18
HIST1H1AQ02539 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HIST1H1AQ02539 KRT8P45-201ENST00000414328 1447 ntBASIC13.9□□□□□ -0.19
HIST1H1AQ02539 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 PCDHA12-202ENST00000613593 2588 ntBASIC13.89□□□□□ -0.19
HIST1H1AQ02539 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 ABHD17AP1-201ENST00000358206 933 ntBASIC13.89□□□□□ -0.19
HIST1H1AQ02539 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 BUB3-202ENST00000368859 667 ntTSL 3 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 CRYGFP-201ENST00000418459 633 ntBASIC13.89□□□□□ -0.19
HIST1H1AQ02539 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 GRAP-204ENST00000573099 846 ntTSL 3 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 EML3-212ENST00000494176 2901 ntTSL 2 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 CD276-201ENST00000318424 2738 ntTSL 5 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HIST1H1AQ02539 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 AL109659.2-201ENST00000606809 1674 ntBASIC13.88□□□□□ -0.19
HIST1H1AQ02539 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HIST1H1AQ02539 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms