Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC14.83□□□□□ -0.04
LMO4P61968 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMO4P61968 TLE1-202ENST00000376484 666 ntTSL 3 BASIC14.83□□□□□ -0.04
LMO4P61968 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMO4P61968 SCARNA2-201ENST00000458748 420 ntBASIC14.83□□□□□ -0.04
LMO4P61968 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC14.83□□□□□ -0.04
LMO4P61968 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC14.83□□□□□ -0.04
LMO4P61968 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LMO4P61968 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC14.83□□□□□ -0.04
LMO4P61968 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC14.83□□□□□ -0.04
LMO4P61968 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC14.83□□□□□ -0.04
LMO4P61968 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
LMO4P61968 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMO4P61968 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC14.83□□□□□ -0.04
LMO4P61968 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMO4P61968 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMO4P61968 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC14.83□□□□□ -0.04
LMO4P61968 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LMO4P61968 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMO4P61968 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMO4P61968 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMO4P61968 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMO4P61968 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
LMO4P61968 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC14.83□□□□□ -0.04
LMO4P61968 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC14.82□□□□□ -0.04
LMO4P61968 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
LMO4P61968 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC14.82□□□□□ -0.04
LMO4P61968 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
LMO4P61968 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 CD9-202ENST00000382515 1229 ntTSL 5 BASIC14.82□□□□□ -0.04
LMO4P61968 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
LMO4P61968 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC14.82□□□□□ -0.04
LMO4P61968 AC073648.2-201ENST00000510116 352 ntBASIC14.82□□□□□ -0.04
LMO4P61968 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC14.82□□□□□ -0.04
LMO4P61968 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC14.82□□□□□ -0.04
LMO4P61968 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC14.82□□□□□ -0.04
LMO4P61968 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
LMO4P61968 NME4-212ENST00000621774 904 ntTSL 3 BASIC14.82□□□□□ -0.04
LMO4P61968 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
LMO4P61968 IL9RP2-201ENST00000423948 1312 ntBASIC14.82□□□□□ -0.04
LMO4P61968 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC14.82□□□□□ -0.04
LMO4P61968 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC14.82□□□□□ -0.04
LMO4P61968 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC14.82□□□□□ -0.04
LMO4P61968 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC14.82□□□□□ -0.04
LMO4P61968 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC14.82□□□□□ -0.04
LMO4P61968 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMO4P61968 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMO4P61968 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
LMO4P61968 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
LMO4P61968 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
LMO4P61968 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
LMO4P61968 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
LMO4P61968 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMO4P61968 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMO4P61968 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC14.81□□□□□ -0.04
LMO4P61968 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMO4P61968 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMO4P61968 FAM220CP-201ENST00000395253 831 ntBASIC14.81□□□□□ -0.04
LMO4P61968 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC14.81□□□□□ -0.04
LMO4P61968 AC007967.3-201ENST00000434308 558 ntBASIC14.81□□□□□ -0.04
LMO4P61968 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC14.81□□□□□ -0.04
LMO4P61968 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC14.81□□□□□ -0.04
LMO4P61968 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC14.81□□□□□ -0.04
LMO4P61968 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC14.81□□□□□ -0.04
LMO4P61968 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LMO4P61968 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
LMO4P61968 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMO4P61968 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC14.81□□□□□ -0.04
LMO4P61968 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC14.81□□□□□ -0.04
LMO4P61968 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMO4P61968 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMO4P61968 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC14.81□□□□□ -0.04
LMO4P61968 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
LMO4P61968 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMO4P61968 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
LMO4P61968 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMO4P61968 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LMO4P61968 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LMO4P61968 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms