Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
FOXA3P55318 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
FOXA3P55318 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA3P55318 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
FOXA3P55318 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
FOXA3P55318 POU5F1P3-201ENST00000428824 1078 ntBASIC13.63□□□□□ -0.23
FOXA3P55318 GXYLT1P2-201ENST00000433312 1230 ntBASIC13.63□□□□□ -0.23
FOXA3P55318 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 RGMA-211ENST00000557420 989 ntTSL 3 BASIC13.63□□□□□ -0.23
FOXA3P55318 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA3P55318 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA3P55318 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA3P55318 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC13.63□□□□□ -0.23
FOXA3P55318 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC13.63□□□□□ -0.23
FOXA3P55318 HLA-A-209ENST00000638375 975 ntBASIC13.63□□□□□ -0.23
FOXA3P55318 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC13.63□□□□□ -0.23
FOXA3P55318 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC13.63□□□□□ -0.23
FOXA3P55318 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
FOXA3P55318 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
FOXA3P55318 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 OVCH1-AS1-204ENST00000641955 5529 ntBASIC13.63□□□□□ -0.23
FOXA3P55318 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 HTR7P1-201ENST00000538670 1336 ntBASIC13.63□□□□□ -0.23
FOXA3P55318 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
FOXA3P55318 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
FOXA3P55318 GMCL1P1-201ENST00000463439 1581 ntBASIC13.62□□□□□ -0.23
FOXA3P55318 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
FOXA3P55318 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
FOXA3P55318 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
FOXA3P55318 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 LTF-203ENST00000426532 2494 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA3P55318 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA3P55318 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA3P55318 ABHD17AP6-201ENST00000458502 1044 ntBASIC13.62□□□□□ -0.23
FOXA3P55318 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA3P55318 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA3P55318 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC13.62□□□□□ -0.23
FOXA3P55318 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA3P55318 MDK-213ENST00000617138 635 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA3P55318 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC13.62□□□□□ -0.23
FOXA3P55318 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA3P55318 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA3P55318 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.62□□□□□ -0.23
FOXA3P55318 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
FOXA3P55318 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
FOXA3P55318 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
FOXA3P55318 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
FOXA3P55318 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
FOXA3P55318 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
FOXA3P55318 AC008741.2-201ENST00000612792 3115 ntBASIC13.62□□□□□ -0.23
FOXA3P55318 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA3P55318 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC13.61□□□□□ -0.23
FOXA3P55318 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
FOXA3P55318 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
FOXA3P55318 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 PHGDH-209ENST00000641074 1780 ntBASIC13.61□□□□□ -0.23
FOXA3P55318 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
FOXA3P55318 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC13.61□□□□□ -0.23
FOXA3P55318 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms