Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC23.8■■□□□ 1.4
COL18A1P39060 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL18A1P39060 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
COL18A1P39060 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC23.79■■□□□ 1.4
COL18A1P39060 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL18A1P39060 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL18A1P39060 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC23.79■■□□□ 1.4
COL18A1P39060 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC23.79■■□□□ 1.4
COL18A1P39060 NCF1C-201ENST00000438382 1427 ntBASIC23.79■■□□□ 1.4
COL18A1P39060 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
COL18A1P39060 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC23.78■■□□□ 1.4
COL18A1P39060 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC23.78■■□□□ 1.4
COL18A1P39060 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC23.78■■□□□ 1.4
COL18A1P39060 AL513190.1-201ENST00000621254 727 ntBASIC23.78■■□□□ 1.4
COL18A1P39060 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC23.78■■□□□ 1.4
COL18A1P39060 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 PTGES2-AS1-201ENST00000443493 2100 ntBASIC23.78■■□□□ 1.4
COL18A1P39060 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
COL18A1P39060 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC23.78■■□□□ 1.4
COL18A1P39060 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
COL18A1P39060 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC23.78■■□□□ 1.4
COL18A1P39060 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC23.78■■□□□ 1.4
COL18A1P39060 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC23.78■■□□□ 1.4
COL18A1P39060 ARTN-206ENST00000472435 402 ntTSL 3 BASIC23.78■■□□□ 1.4
COL18A1P39060 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC23.78■■□□□ 1.4
COL18A1P39060 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC23.78■■□□□ 1.4
COL18A1P39060 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL18A1P39060 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL18A1P39060 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
COL18A1P39060 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC23.77■■□□□ 1.4
COL18A1P39060 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL18A1P39060 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC23.77■■□□□ 1.4
COL18A1P39060 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC23.77■■□□□ 1.4
COL18A1P39060 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL18A1P39060 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC23.77■■□□□ 1.4
COL18A1P39060 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC23.77■■□□□ 1.4
COL18A1P39060 AC004706.3-202ENST00000621574 984 ntBASIC23.77■■□□□ 1.4
COL18A1P39060 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL18A1P39060 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL18A1P39060 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL18A1P39060 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC23.76■■□□□ 1.39
COL18A1P39060 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC23.76■■□□□ 1.39
COL18A1P39060 CYMP-203ENST00000474680 1263 ntBASIC23.76■■□□□ 1.39
COL18A1P39060 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC23.76■■□□□ 1.39
COL18A1P39060 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC23.76■■□□□ 1.39
COL18A1P39060 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL18A1P39060 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC23.76■■□□□ 1.39
COL18A1P39060 GMCL1P1-201ENST00000463439 1581 ntBASIC23.76■■□□□ 1.39
COL18A1P39060 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC23.76■■□□□ 1.39
COL18A1P39060 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
COL18A1P39060 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
COL18A1P39060 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL18A1P39060 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL18A1P39060 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC23.75■■□□□ 1.39
COL18A1P39060 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL18A1P39060 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL18A1P39060 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC23.75■■□□□ 1.39
COL18A1P39060 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL18A1P39060 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL18A1P39060 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL18A1P39060 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC23.75■■□□□ 1.39
COL18A1P39060 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL18A1P39060 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC23.75■■□□□ 1.39
COL18A1P39060 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL18A1P39060 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC23.75■■□□□ 1.39
COL18A1P39060 IGLL3P-201ENST00000412472 434 ntBASIC23.75■■□□□ 1.39
COL18A1P39060 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC23.75■■□□□ 1.39
COL18A1P39060 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
COL18A1P39060 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC23.75■■□□□ 1.39
COL18A1P39060 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC23.75■■□□□ 1.39
COL18A1P39060 AL589182.2-201ENST00000619332 1049 ntBASIC23.75■■□□□ 1.39
COL18A1P39060 AC073592.5-201ENST00000624854 528 ntBASIC23.75■■□□□ 1.39
COL18A1P39060 AC005593.1-201ENST00000624894 515 ntBASIC23.75■■□□□ 1.39
COL18A1P39060 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL18A1P39060 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
COL18A1P39060 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
COL18A1P39060 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC23.75■■□□□ 1.39
COL18A1P39060 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL18A1P39060 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL18A1P39060 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL18A1P39060 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL18A1P39060 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL18A1P39060 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL18A1P39060 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
COL18A1P39060 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL18A1P39060 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL18A1P39060 RPS15-207ENST00000591032 550 ntTSL 3 BASIC23.74■■□□□ 1.39
COL18A1P39060 AL596442.2-201ENST00000610240 980 ntBASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms