Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CIITAP33076 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
CIITAP33076 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.37■□□□□ 0.85
CIITAP33076 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.37■□□□□ 0.85
CIITAP33076 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CIITAP33076 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CIITAP33076 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CIITAP33076 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.37■□□□□ 0.85
CIITAP33076 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
CIITAP33076 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.37■□□□□ 0.85
CIITAP33076 NUS1P1-201ENST00000446295 882 ntBASIC20.37■□□□□ 0.85
CIITAP33076 VENTXP7-201ENST00000475503 772 ntBASIC20.37■□□□□ 0.85
CIITAP33076 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC20.37■□□□□ 0.85
CIITAP33076 AP000867.3-201ENST00000524675 377 ntBASIC20.37■□□□□ 0.85
CIITAP33076 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 AC005336.2-201ENST00000593183 939 ntBASIC20.37■□□□□ 0.85
CIITAP33076 CLEC4GP1-201ENST00000596555 870 ntBASIC20.37■□□□□ 0.85
CIITAP33076 REXO1L9P-201ENST00000604264 2108 ntBASIC20.37■□□□□ 0.85
CIITAP33076 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CIITAP33076 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.37■□□□□ 0.85
CIITAP33076 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 ABALON-201ENST00000629058 1903 ntBASIC20.37■□□□□ 0.85
CIITAP33076 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CIITAP33076 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CIITAP33076 AC135050.7-201ENST00000624508 2218 ntBASIC20.37■□□□□ 0.85
CIITAP33076 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.37■□□□□ 0.85
CIITAP33076 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.36■□□□□ 0.85
CIITAP33076 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.36■□□□□ 0.85
CIITAP33076 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CIITAP33076 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.36■□□□□ 0.85
CIITAP33076 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CIITAP33076 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CIITAP33076 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CIITAP33076 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.36■□□□□ 0.85
CIITAP33076 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CIITAP33076 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.36■□□□□ 0.85
CIITAP33076 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.36■□□□□ 0.85
CIITAP33076 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.36■□□□□ 0.85
CIITAP33076 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.36■□□□□ 0.85
CIITAP33076 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.36■□□□□ 0.85
CIITAP33076 MIR3652-201ENST00000579335 131 ntBASIC20.36■□□□□ 0.85
CIITAP33076 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
CIITAP33076 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.36■□□□□ 0.85
CIITAP33076 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.36■□□□□ 0.85
CIITAP33076 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
CIITAP33076 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CIITAP33076 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CIITAP33076 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.36■□□□□ 0.85
CIITAP33076 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CIITAP33076 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.36■□□□□ 0.85
CIITAP33076 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.36■□□□□ 0.85
CIITAP33076 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CIITAP33076 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.36■□□□□ 0.85
CIITAP33076 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CIITAP33076 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CIITAP33076 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.35■□□□□ 0.85
CIITAP33076 AL354751.1-201ENST00000412768 1863 ntBASIC20.35■□□□□ 0.85
CIITAP33076 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CIITAP33076 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 AC022898.2-201ENST00000616822 1312 ntBASIC20.35■□□□□ 0.85
CIITAP33076 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CIITAP33076 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.35■□□□□ 0.85
CIITAP33076 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.35■□□□□ 0.85
CIITAP33076 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
CIITAP33076 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.35■□□□□ 0.85
CIITAP33076 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.35■□□□□ 0.85
CIITAP33076 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.35■□□□□ 0.85
CIITAP33076 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.35■□□□□ 0.85
CIITAP33076 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.35■□□□□ 0.85
CIITAP33076 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CIITAP33076 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.35■□□□□ 0.85
CIITAP33076 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.35■□□□□ 0.85
CIITAP33076 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CIITAP33076 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.35■□□□□ 0.85
CIITAP33076 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CIITAP33076 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms