Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BDNFP23560 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.07■□□□□ 0.64
BDNFP23560 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.07■□□□□ 0.64
BDNFP23560 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.07■□□□□ 0.64
BDNFP23560 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.07■□□□□ 0.64
BDNFP23560 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.07■□□□□ 0.64
BDNFP23560 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BDNFP23560 AL732292.2-201ENST00000609649 430 ntBASIC19.07■□□□□ 0.64
BDNFP23560 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BDNFP23560 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.07■□□□□ 0.64
BDNFP23560 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
BDNFP23560 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BDNFP23560 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.07■□□□□ 0.64
BDNFP23560 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
BDNFP23560 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BDNFP23560 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BDNFP23560 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BDNFP23560 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BDNFP23560 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.07■□□□□ 0.64
BDNFP23560 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.06■□□□□ 0.64
BDNFP23560 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.06■□□□□ 0.64
BDNFP23560 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.06■□□□□ 0.64
BDNFP23560 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 AC135776.1-201ENST00000319817 2481 ntBASIC19.06■□□□□ 0.64
BDNFP23560 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.06■□□□□ 0.64
BDNFP23560 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
BDNFP23560 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
BDNFP23560 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
BDNFP23560 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.06■□□□□ 0.64
BDNFP23560 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.06■□□□□ 0.64
BDNFP23560 MINOS1P3-201ENST00000457048 203 ntBASIC19.06■□□□□ 0.64
BDNFP23560 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.06■□□□□ 0.64
BDNFP23560 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.06■□□□□ 0.64
BDNFP23560 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.06■□□□□ 0.64
BDNFP23560 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
BDNFP23560 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
BDNFP23560 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.06■□□□□ 0.64
BDNFP23560 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
BDNFP23560 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.05■□□□□ 0.64
BDNFP23560 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 TSPY19P-201ENST00000418461 509 ntBASIC19.05■□□□□ 0.64
BDNFP23560 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.05■□□□□ 0.64
BDNFP23560 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.05■□□□□ 0.64
BDNFP23560 TSPY18P-201ENST00000441642 509 ntBASIC19.05■□□□□ 0.64
BDNFP23560 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.05■□□□□ 0.64
BDNFP23560 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
BDNFP23560 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.05■□□□□ 0.64
BDNFP23560 UNC93B7-201ENST00000509439 705 ntBASIC19.05■□□□□ 0.64
BDNFP23560 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.05■□□□□ 0.64
BDNFP23560 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
BDNFP23560 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.05■□□□□ 0.64
BDNFP23560 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.05■□□□□ 0.64
BDNFP23560 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
BDNFP23560 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.05■□□□□ 0.64
BDNFP23560 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 AC093010.1-201ENST00000473625 1624 ntBASIC19.04■□□□□ 0.64
BDNFP23560 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
BDNFP23560 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.04■□□□□ 0.64
BDNFP23560 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.04■□□□□ 0.64
BDNFP23560 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
BDNFP23560 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms