Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC073508.3-201ENST00000619697 1419 ntBASIC17.38■□□□□ 0.37
SEMA3DO95025 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.37■□□□□ 0.37
SEMA3DO95025 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.37■□□□□ 0.37
SEMA3DO95025 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
SEMA3DO95025 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 NOC2LP2-201ENST00000407594 1944 ntBASIC17.37■□□□□ 0.37
SEMA3DO95025 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.37■□□□□ 0.37
SEMA3DO95025 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
SEMA3DO95025 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SEMA3DO95025 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.37■□□□□ 0.37
SEMA3DO95025 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
SEMA3DO95025 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.37■□□□□ 0.37
SEMA3DO95025 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
SEMA3DO95025 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
SEMA3DO95025 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.37■□□□□ 0.37
SEMA3DO95025 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
SEMA3DO95025 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SEMA3DO95025 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SEMA3DO95025 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SEMA3DO95025 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.37■□□□□ 0.37
SEMA3DO95025 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SEMA3DO95025 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SEMA3DO95025 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.36■□□□□ 0.37
SEMA3DO95025 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.36■□□□□ 0.37
SEMA3DO95025 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.36■□□□□ 0.37
SEMA3DO95025 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.36■□□□□ 0.37
SEMA3DO95025 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.36■□□□□ 0.37
SEMA3DO95025 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.36■□□□□ 0.37
SEMA3DO95025 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.36■□□□□ 0.37
SEMA3DO95025 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SEMA3DO95025 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.36■□□□□ 0.37
SEMA3DO95025 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.36■□□□□ 0.37
SEMA3DO95025 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SEMA3DO95025 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
SEMA3DO95025 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SEMA3DO95025 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.35■□□□□ 0.37
SEMA3DO95025 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.35■□□□□ 0.37
SEMA3DO95025 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SEMA3DO95025 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
SEMA3DO95025 LINC01023-201ENST00000606054 436 ntBASIC17.35■□□□□ 0.37
SEMA3DO95025 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.35■□□□□ 0.37
SEMA3DO95025 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.35■□□□□ 0.37
SEMA3DO95025 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.35■□□□□ 0.37
SEMA3DO95025 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SEMA3DO95025 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SEMA3DO95025 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.35■□□□□ 0.37
SEMA3DO95025 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.35■□□□□ 0.37
SEMA3DO95025 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SEMA3DO95025 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.35■□□□□ 0.37
SEMA3DO95025 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SEMA3DO95025 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.35■□□□□ 0.37
SEMA3DO95025 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SEMA3DO95025 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SEMA3DO95025 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms