Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.86■□□□□ 0.45
SNX3O60493 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SNX3O60493 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.86■□□□□ 0.45
SNX3O60493 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.86■□□□□ 0.45
SNX3O60493 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.86■□□□□ 0.45
SNX3O60493 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC17.86■□□□□ 0.45
SNX3O60493 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SNX3O60493 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.86■□□□□ 0.45
SNX3O60493 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SNX3O60493 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SNX3O60493 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.86■□□□□ 0.45
SNX3O60493 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.86■□□□□ 0.45
SNX3O60493 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SNX3O60493 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SNX3O60493 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.85■□□□□ 0.45
SNX3O60493 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SNX3O60493 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SNX3O60493 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
SNX3O60493 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SNX3O60493 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SNX3O60493 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SNX3O60493 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.85■□□□□ 0.45
SNX3O60493 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SNX3O60493 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.85■□□□□ 0.45
SNX3O60493 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.85■□□□□ 0.45
SNX3O60493 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
SNX3O60493 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.85■□□□□ 0.45
SNX3O60493 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SNX3O60493 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.85■□□□□ 0.45
SNX3O60493 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.85■□□□□ 0.45
SNX3O60493 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.85■□□□□ 0.45
SNX3O60493 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.85■□□□□ 0.45
SNX3O60493 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.85■□□□□ 0.45
SNX3O60493 HLA-B-256ENST00000639848 1089 ntBASIC17.85■□□□□ 0.45
SNX3O60493 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SNX3O60493 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.85■□□□□ 0.45
SNX3O60493 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SNX3O60493 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SNX3O60493 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SNX3O60493 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SNX3O60493 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SNX3O60493 LINC00304-203ENST00000565008 1864 ntBASIC17.84■□□□□ 0.45
SNX3O60493 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SNX3O60493 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SNX3O60493 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SNX3O60493 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SNX3O60493 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.84■□□□□ 0.45
SNX3O60493 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SNX3O60493 ME3-201ENST00000323418 1068 ntTSL 5 BASIC17.84■□□□□ 0.45
SNX3O60493 MIR564-202ENST00000385049 94 ntBASIC17.84■□□□□ 0.45
SNX3O60493 METTL26-203ENST00000397664 604 ntTSL 2 BASIC17.84■□□□□ 0.45
SNX3O60493 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SNX3O60493 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.84■□□□□ 0.45
SNX3O60493 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SNX3O60493 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.84■□□□□ 0.45
SNX3O60493 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.84■□□□□ 0.45
SNX3O60493 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.84■□□□□ 0.45
SNX3O60493 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.84■□□□□ 0.45
SNX3O60493 AC105036.2-201ENST00000569468 176 ntBASIC17.84■□□□□ 0.45
SNX3O60493 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC17.84■□□□□ 0.45
SNX3O60493 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC17.84■□□□□ 0.45
SNX3O60493 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SNX3O60493 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.84■□□□□ 0.45
SNX3O60493 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SNX3O60493 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.84■□□□□ 0.45
SNX3O60493 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.84■□□□□ 0.45
SNX3O60493 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SNX3O60493 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.83■□□□□ 0.45
SNX3O60493 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.83■□□□□ 0.45
SNX3O60493 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SNX3O60493 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
SNX3O60493 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
SNX3O60493 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SNX3O60493 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.83■□□□□ 0.45
SNX3O60493 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
SNX3O60493 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
SNX3O60493 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SNX3O60493 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SNX3O60493 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.83■□□□□ 0.45
SNX3O60493 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.83■□□□□ 0.45
SNX3O60493 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SNX3O60493 PCDHA1-201ENST00000378133 2726 ntBASIC17.83■□□□□ 0.45
SNX3O60493 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
SNX3O60493 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SNX3O60493 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SNX3O60493 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SNX3O60493 ZNRF2P3-201ENST00000424200 374 ntBASIC17.83■□□□□ 0.44
SNX3O60493 AF201337.1-201ENST00000520239 748 ntBASIC17.83■□□□□ 0.44
SNX3O60493 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms