Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 KRT18P1-202ENST00000452408 1331 ntBASIC18.51■□□□□ 0.55
CBX4O00257 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CBX4O00257 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CBX4O00257 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CBX4O00257 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.51■□□□□ 0.55
CBX4O00257 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CBX4O00257 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.51■□□□□ 0.55
CBX4O00257 ATP5G2P1-201ENST00000433580 426 ntBASIC18.51■□□□□ 0.55
CBX4O00257 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.51■□□□□ 0.55
CBX4O00257 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CBX4O00257 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.51■□□□□ 0.55
CBX4O00257 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.51■□□□□ 0.55
CBX4O00257 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CBX4O00257 AC090616.6-201ENST00000582640 721 ntBASIC18.51■□□□□ 0.55
CBX4O00257 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.51■□□□□ 0.55
CBX4O00257 NPAP1P7-201ENST00000613027 823 ntBASIC18.51■□□□□ 0.55
CBX4O00257 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CBX4O00257 AC135776.1-201ENST00000319817 2481 ntBASIC18.51■□□□□ 0.55
CBX4O00257 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CBX4O00257 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
CBX4O00257 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CBX4O00257 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CBX4O00257 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CBX4O00257 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.51■□□□□ 0.55
CBX4O00257 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.51■□□□□ 0.55
CBX4O00257 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CBX4O00257 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.51■□□□□ 0.55
CBX4O00257 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.51■□□□□ 0.55
CBX4O00257 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CBX4O00257 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CBX4O00257 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CBX4O00257 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CBX4O00257 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.5■□□□□ 0.55
CBX4O00257 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CBX4O00257 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.5■□□□□ 0.55
CBX4O00257 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
CBX4O00257 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.5■□□□□ 0.55
CBX4O00257 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CBX4O00257 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.5■□□□□ 0.55
CBX4O00257 TSPY12P-201ENST00000421279 868 ntBASIC18.5■□□□□ 0.55
CBX4O00257 AP002383.4-201ENST00000442518 975 ntBASIC18.5■□□□□ 0.55
CBX4O00257 GUSBP12-201ENST00000513727 720 ntBASIC18.5■□□□□ 0.55
CBX4O00257 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.5■□□□□ 0.55
CBX4O00257 AP002414.4-201ENST00000589764 1148 ntBASIC18.5■□□□□ 0.55
CBX4O00257 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.5■□□□□ 0.55
CBX4O00257 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CBX4O00257 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CBX4O00257 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.5■□□□□ 0.55
CBX4O00257 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.5■□□□□ 0.55
CBX4O00257 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.5■□□□□ 0.55
CBX4O00257 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CBX4O00257 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.49■□□□□ 0.55
CBX4O00257 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CBX4O00257 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CBX4O00257 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
CBX4O00257 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CBX4O00257 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CBX4O00257 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
CBX4O00257 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.49■□□□□ 0.55
CBX4O00257 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
CBX4O00257 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CBX4O00257 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.49■□□□□ 0.55
CBX4O00257 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
CBX4O00257 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CBX4O00257 AC092329.2-201ENST00000598402 547 ntBASIC18.49■□□□□ 0.55
CBX4O00257 AC124864.1-201ENST00000623408 392 ntBASIC18.49■□□□□ 0.55
CBX4O00257 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CBX4O00257 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CBX4O00257 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.49■□□□□ 0.55
CBX4O00257 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CBX4O00257 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
CBX4O00257 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CBX4O00257 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CBX4O00257 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CBX4O00257 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CBX4O00257 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CBX4O00257 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.49■□□□□ 0.55
CBX4O00257 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CBX4O00257 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CBX4O00257 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CBX4O00257 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms