Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 AC046158.3-201ENST00000624947 2558 ntBASIC13.28□□□□□ -0.28
SMKR1H3BMG3 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 KRT8P3-201ENST00000519669 1449 ntBASIC13.28□□□□□ -0.28
SMKR1H3BMG3 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC13.27□□□□□ -0.28
SMKR1H3BMG3 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
SMKR1H3BMG3 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SMKR1H3BMG3 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
SMKR1H3BMG3 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC13.27□□□□□ -0.28
SMKR1H3BMG3 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
SMKR1H3BMG3 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SMKR1H3BMG3 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
SMKR1H3BMG3 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
SMKR1H3BMG3 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
SMKR1H3BMG3 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SMKR1H3BMG3 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 SLC29A4P2-201ENST00000504749 1089 ntBASIC13.27□□□□□ -0.29
SMKR1H3BMG3 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 NFIC-211ENST00000641145 8399 ntBASIC13.27□□□□□ -0.29
SMKR1H3BMG3 KRT8P11-201ENST00000409686 1436 ntBASIC13.27□□□□□ -0.29
SMKR1H3BMG3 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
SMKR1H3BMG3 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 CICP6-201ENST00000457191 2729 ntBASIC13.26□□□□□ -0.29
SMKR1H3BMG3 PCDH8P1-201ENST00000428983 2773 ntBASIC13.26□□□□□ -0.29
SMKR1H3BMG3 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 POU5F1P3-201ENST00000428824 1078 ntBASIC13.26□□□□□ -0.29
SMKR1H3BMG3 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 HTR7P1-201ENST00000538670 1336 ntBASIC13.26□□□□□ -0.29
SMKR1H3BMG3 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC13.26□□□□□ -0.29
SMKR1H3BMG3 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SMKR1H3BMG3 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
SMKR1H3BMG3 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SMKR1H3BMG3 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SMKR1H3BMG3 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC13.25□□□□□ -0.29
SMKR1H3BMG3 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
SMKR1H3BMG3 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
SMKR1H3BMG3 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SMKR1H3BMG3 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SMKR1H3BMG3 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SMKR1H3BMG3 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
SMKR1H3BMG3 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
SMKR1H3BMG3 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms