Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 SLBP-205ENST00000488267 987 ntTSL 2 BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 DAD1-205ENST00000543337 501 ntTSL 3 BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 KRT19P2-202ENST00000557173 1012 ntBASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 AL008721.1-201ENST00000609964 604 ntBASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
COL17A1Q9UMD9 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC27.33■■□□□ 1.97
COL17A1Q9UMD9 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC27.33■■□□□ 1.97
COL17A1Q9UMD9 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC27.33■■□□□ 1.97
COL17A1Q9UMD9 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
COL17A1Q9UMD9 MIR149-201ENST00000384879 89 ntBASIC27.33■■□□□ 1.97
COL17A1Q9UMD9 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC27.33■■□□□ 1.97
COL17A1Q9UMD9 ACTG1P14-201ENST00000446382 1122 ntBASIC27.33■■□□□ 1.97
COL17A1Q9UMD9 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
COL17A1Q9UMD9 DUX4L27-201ENST00000554796 1261 ntBASIC27.33■■□□□ 1.97
COL17A1Q9UMD9 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC27.33■■□□□ 1.97
COL17A1Q9UMD9 AC091812.2-201ENST00000619081 385 ntBASIC27.33■■□□□ 1.97
COL17A1Q9UMD9 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
COL17A1Q9UMD9 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC27.33■■□□□ 1.97
COL17A1Q9UMD9 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 NMU-203ENST00000507338 658 ntTSL 3 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 AC022145.2-201ENST00000598203 171 ntBASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 IRX1P1-201ENST00000438849 1838 ntBASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 UBQLN4P1-201ENST00000461599 1801 ntBASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 MTMR9LP-203ENST00000426597 1545 ntBASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 LBX2-AS1-202ENST00000603175 2083 ntBASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 UGT1A2P-201ENST00000454886 866 ntBASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 AC023141.5-201ENST00000458585 616 ntBASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 POLD4-207ENST00000531239 584 ntTSL 2 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 TK1-204ENST00000590430 683 ntTSL 3 BASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 AC008667.4-201ENST00000607370 168 ntBASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 AC004877.2-201ENST00000623941 599 ntBASIC27.32■■□□□ 1.96
COL17A1Q9UMD9 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 CD9-202ENST00000382515 1229 ntTSL 5 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 AC008687.5-201ENST00000593746 558 ntBASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC27.31■■□□□ 1.96
COL17A1Q9UMD9 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 PC-214ENST00000628663 1470 ntTSL 5 BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 SPDYE21P-201ENST00000413323 827 ntBASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 AC093214.1-201ENST00000511688 1107 ntBASIC27.3■■□□□ 1.96
COL17A1Q9UMD9 AC025678.2-201ENST00000562061 970 ntBASIC27.3■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms