Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.24■□□□□ 0.19
VSX1Q9NZR4 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
VSX1Q9NZR4 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VSX1Q9NZR4 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 AP000997.3-201ENST00000623333 2250 ntBASIC16.22■□□□□ 0.19
VSX1Q9NZR4 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 HMGA1P5-201ENST00000412453 271 ntBASIC16.22■□□□□ 0.19
VSX1Q9NZR4 AC009947.2-201ENST00000444014 672 ntBASIC16.22■□□□□ 0.19
VSX1Q9NZR4 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 NEK4P2-201ENST00000580004 1012 ntBASIC16.22■□□□□ 0.19
VSX1Q9NZR4 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VSX1Q9NZR4 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 AC134043.2-201ENST00000624206 2238 ntBASIC16.21■□□□□ 0.19
VSX1Q9NZR4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VSX1Q9NZR4 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms