Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 MIR662-201ENST00000384847 95 ntBASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.31■□□□□ 0.84
CCSER1Q9C0I3 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 AC006116.8-202ENST00000587620 1550 ntBASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 KRT18P48-201ENST00000434763 852 ntBASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 AL359075.1-203ENST00000462729 1002 ntBASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 AC134043.2-201ENST00000624206 2238 ntBASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCSER1Q9C0I3 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 AC112907.2-201ENST00000448639 330 ntBASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCSER1Q9C0I3 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 AC022898.2-201ENST00000616822 1312 ntBASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 GNAS-203ENST00000306120 1878 ntBASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCSER1Q9C0I3 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms