Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP28Q96RU2 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.77■□□□□ 0.92
USP28Q96RU2 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP28Q96RU2 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.77■□□□□ 0.92
USP28Q96RU2 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.77■□□□□ 0.92
USP28Q96RU2 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.77■□□□□ 0.92
USP28Q96RU2 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.77■□□□□ 0.92
USP28Q96RU2 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.77■□□□□ 0.92
USP28Q96RU2 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.77■□□□□ 0.92
USP28Q96RU2 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.77■□□□□ 0.92
USP28Q96RU2 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.77■□□□□ 0.92
USP28Q96RU2 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.77■□□□□ 0.92
USP28Q96RU2 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.77■□□□□ 0.92
USP28Q96RU2 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP28Q96RU2 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
USP28Q96RU2 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP28Q96RU2 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.77■□□□□ 0.92
USP28Q96RU2 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.77■□□□□ 0.91
USP28Q96RU2 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
USP28Q96RU2 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
USP28Q96RU2 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.91
USP28Q96RU2 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
USP28Q96RU2 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP28Q96RU2 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP28Q96RU2 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
USP28Q96RU2 AC100803.2-201ENST00000562459 1963 ntBASIC20.76■□□□□ 0.91
USP28Q96RU2 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
USP28Q96RU2 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP28Q96RU2 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.76■□□□□ 0.91
USP28Q96RU2 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.76■□□□□ 0.91
USP28Q96RU2 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
USP28Q96RU2 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.76■□□□□ 0.91
USP28Q96RU2 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.76■□□□□ 0.91
USP28Q96RU2 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.76■□□□□ 0.91
USP28Q96RU2 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.76■□□□□ 0.91
USP28Q96RU2 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.76■□□□□ 0.91
USP28Q96RU2 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP28Q96RU2 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP28Q96RU2 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.76■□□□□ 0.91
USP28Q96RU2 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.76■□□□□ 0.91
USP28Q96RU2 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
USP28Q96RU2 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP28Q96RU2 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.76■□□□□ 0.91
USP28Q96RU2 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.76■□□□□ 0.91
USP28Q96RU2 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP28Q96RU2 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP28Q96RU2 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP28Q96RU2 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP28Q96RU2 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP28Q96RU2 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
USP28Q96RU2 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP28Q96RU2 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP28Q96RU2 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP28Q96RU2 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP28Q96RU2 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.75■□□□□ 0.91
USP28Q96RU2 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP28Q96RU2 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP28Q96RU2 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP28Q96RU2 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP28Q96RU2 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
USP28Q96RU2 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP28Q96RU2 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.75■□□□□ 0.91
USP28Q96RU2 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP28Q96RU2 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.74■□□□□ 0.91
USP28Q96RU2 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP28Q96RU2 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP28Q96RU2 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
USP28Q96RU2 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
USP28Q96RU2 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP28Q96RU2 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.74■□□□□ 0.91
USP28Q96RU2 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
USP28Q96RU2 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP28Q96RU2 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
USP28Q96RU2 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.74■□□□□ 0.91
USP28Q96RU2 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP28Q96RU2 HMGA1P5-201ENST00000412453 271 ntBASIC20.74■□□□□ 0.91
USP28Q96RU2 AL596275.1-201ENST00000423464 877 ntBASIC20.74■□□□□ 0.91
USP28Q96RU2 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP28Q96RU2 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP28Q96RU2 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.74■□□□□ 0.91
USP28Q96RU2 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
USP28Q96RU2 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.74■□□□□ 0.91
USP28Q96RU2 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.74■□□□□ 0.91
USP28Q96RU2 MIR3917-201ENST00000580971 93 ntBASIC20.74■□□□□ 0.91
USP28Q96RU2 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP28Q96RU2 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.74■□□□□ 0.91
USP28Q96RU2 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
USP28Q96RU2 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
USP28Q96RU2 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP28Q96RU2 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP28Q96RU2 AC139713.2-201ENST00000641328 2723 ntBASIC20.74■□□□□ 0.91
USP28Q96RU2 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP28Q96RU2 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP28Q96RU2 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.74■□□□□ 0.91
USP28Q96RU2 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
USP28Q96RU2 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP28Q96RU2 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms