Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.02■□□□□ 0.47
VPS35Q96QK1 BCL2-203ENST00000589955 5011 ntBASIC18.02■□□□□ 0.47
VPS35Q96QK1 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.02■□□□□ 0.47
VPS35Q96QK1 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
VPS35Q96QK1 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS35Q96QK1 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS35Q96QK1 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.02■□□□□ 0.47
VPS35Q96QK1 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
VPS35Q96QK1 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 AC093677.2-201ENST00000600169 1863 ntBASIC18.01■□□□□ 0.47
VPS35Q96QK1 AC009113.1-201ENST00000570267 2443 ntBASIC18.01■□□□□ 0.47
VPS35Q96QK1 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.01■□□□□ 0.47
VPS35Q96QK1 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 Z83836.1-201ENST00000624605 1642 ntBASIC18.01■□□□□ 0.47
VPS35Q96QK1 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS35Q96QK1 NEFHP1-201ENST00000412845 2629 ntBASIC18.01■□□□□ 0.47
VPS35Q96QK1 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS35Q96QK1 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
VPS35Q96QK1 PHGDH-209ENST00000641074 1780 ntBASIC18■□□□□ 0.47
VPS35Q96QK1 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 DDT-203ENST00000403754 569 ntTSL 3 BASIC18■□□□□ 0.47
VPS35Q96QK1 DDT-206ENST00000430101 573 ntTSL 2 BASIC18■□□□□ 0.47
VPS35Q96QK1 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18■□□□□ 0.47
VPS35Q96QK1 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18■□□□□ 0.47
VPS35Q96QK1 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
VPS35Q96QK1 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
VPS35Q96QK1 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18■□□□□ 0.47
VPS35Q96QK1 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18■□□□□ 0.47
VPS35Q96QK1 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
VPS35Q96QK1 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
VPS35Q96QK1 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
VPS35Q96QK1 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS35Q96QK1 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
VPS35Q96QK1 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS35Q96QK1 AC093010.1-201ENST00000473625 1624 ntBASIC17.99■□□□□ 0.47
VPS35Q96QK1 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 TSPY22P-201ENST00000427496 604 ntBASIC17.99■□□□□ 0.47
VPS35Q96QK1 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.99■□□□□ 0.47
VPS35Q96QK1 KRT8P26-201ENST00000534154 1276 ntBASIC17.99■□□□□ 0.47
VPS35Q96QK1 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VPS35Q96QK1 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VPS35Q96QK1 AC004263.2-201ENST00000617183 678 ntBASIC17.99■□□□□ 0.47
VPS35Q96QK1 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.99■□□□□ 0.47
VPS35Q96QK1 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.99■□□□□ 0.47
VPS35Q96QK1 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.99■□□□□ 0.47
VPS35Q96QK1 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
VPS35Q96QK1 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS35Q96QK1 AL353692.3-201ENST00000407031 1396 ntBASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms