Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.2
PTP4A1Q93096 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.33■□□□□ 0.2
PTP4A1Q93096 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTP4A1Q93096 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.33■□□□□ 0.2
PTP4A1Q93096 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTP4A1Q93096 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTP4A1Q93096 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.33■□□□□ 0.2
PTP4A1Q93096 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTP4A1Q93096 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.33■□□□□ 0.2
PTP4A1Q93096 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.33■□□□□ 0.2
PTP4A1Q93096 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTP4A1Q93096 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTP4A1Q93096 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTP4A1Q93096 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTP4A1Q93096 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTP4A1Q93096 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
PTP4A1Q93096 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
PTP4A1Q93096 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.33■□□□□ 0.2
PTP4A1Q93096 AC108860.2-201ENST00000562760 2183 ntBASIC16.33■□□□□ 0.2
PTP4A1Q93096 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.33■□□□□ 0.2
PTP4A1Q93096 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.33■□□□□ 0.2
PTP4A1Q93096 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PTP4A1Q93096 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.32■□□□□ 0.2
PTP4A1Q93096 KRT8P7-201ENST00000533003 1432 ntBASIC16.32■□□□□ 0.2
PTP4A1Q93096 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.32■□□□□ 0.2
PTP4A1Q93096 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.32■□□□□ 0.2
PTP4A1Q93096 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.32■□□□□ 0.2
PTP4A1Q93096 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.32■□□□□ 0.2
PTP4A1Q93096 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTP4A1Q93096 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.32■□□□□ 0.2
PTP4A1Q93096 AL023803.3-201ENST00000615559 522 ntBASIC16.32■□□□□ 0.2
PTP4A1Q93096 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.32■□□□□ 0.2
PTP4A1Q93096 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
PTP4A1Q93096 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.31■□□□□ 0.2
PTP4A1Q93096 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
PTP4A1Q93096 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 SIRPAP1-201ENST00000448467 1770 ntBASIC16.31■□□□□ 0.2
PTP4A1Q93096 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
PTP4A1Q93096 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.31■□□□□ 0.2
PTP4A1Q93096 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PTP4A1Q93096 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.31■□□□□ 0.2
PTP4A1Q93096 AL596275.1-201ENST00000423464 877 ntBASIC16.31■□□□□ 0.2
PTP4A1Q93096 AP005242.2-201ENST00000580065 1175 ntBASIC16.31■□□□□ 0.2
PTP4A1Q93096 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PTP4A1Q93096 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.31■□□□□ 0.2
PTP4A1Q93096 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.31■□□□□ 0.2
PTP4A1Q93096 AC124067.4-201ENST00000519691 2379 ntBASIC16.31■□□□□ 0.2
PTP4A1Q93096 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
PTP4A1Q93096 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
PTP4A1Q93096 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
PTP4A1Q93096 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTP4A1Q93096 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTP4A1Q93096 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTP4A1Q93096 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTP4A1Q93096 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTP4A1Q93096 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTP4A1Q93096 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTP4A1Q93096 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.3■□□□□ 0.2
PTP4A1Q93096 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTP4A1Q93096 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.3■□□□□ 0.2
PTP4A1Q93096 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PTP4A1Q93096 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTP4A1Q93096 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PTP4A1Q93096 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTP4A1Q93096 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTP4A1Q93096 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTP4A1Q93096 KRT18P23-201ENST00000435622 1283 ntBASIC16.3■□□□□ 0.2
PTP4A1Q93096 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.3■□□□□ 0.2
PTP4A1Q93096 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.3■□□□□ 0.2
PTP4A1Q93096 AL355075.4-201ENST00000554988 638 ntBASIC16.3■□□□□ 0.2
PTP4A1Q93096 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.3■□□□□ 0.2
PTP4A1Q93096 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.3■□□□□ 0.2
PTP4A1Q93096 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTP4A1Q93096 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTP4A1Q93096 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms