Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 PP12613-201ENST00000424958 2230 ntBASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
ZNF540Q8NDQ6 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 AC008556.1-201ENST00000610908 2040 ntBASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 REXO1L12P-201ENST00000622156 912 ntBASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 KRT8P45-201ENST00000414328 1447 ntBASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ZNF540Q8NDQ6 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
ZNF540Q8NDQ6 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
ZNF540Q8NDQ6 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 AL353807.1-201ENST00000427475 662 ntBASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 PNN-205ENST00000556530 601 ntTSL 2 BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ZNF540Q8NDQ6 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms