Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
LINC00643Q86TS7 MBP-202ENST00000355994 2772 ntTSL 5 BASIC11.33□□□□□ -0.59
LINC00643Q86TS7 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC11.33□□□□□ -0.59
LINC00643Q86TS7 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
LINC00643Q86TS7 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 TK2-202ENST00000417693 1046 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 RARRES2P11-201ENST00000635158 484 ntBASIC11.33□□□□□ -0.6
LINC00643Q86TS7 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC11.33□□□□□ -0.6
LINC00643Q86TS7 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 NID2-208ENST00000617139 3827 ntTSL 5 BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 AC245052.3-201ENST00000450182 901 ntBASIC11.32□□□□□ -0.6
LINC00643Q86TS7 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00643Q86TS7 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms