Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AL133373.2-201ENST00000623187 2828 ntBASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 AL590627.1-203ENST00000421194 1026 ntBASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 MCCD1P1-208ENST00000445732 328 ntBASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 AF228730.7-201ENST00000641842 219 ntBASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 KRT8P50-201ENST00000562022 1438 ntBASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SH3RF1Q7Z6J0 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 AC104819.1-201ENST00000504587 486 ntBASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 AL353801.3-201ENST00000609898 542 ntBASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SH3RF1Q7Z6J0 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
SH3RF1Q7Z6J0 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
SH3RF1Q7Z6J0 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 AKR1C7P-201ENST00000305623 895 ntBASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 AC074051.2-201ENST00000565115 352 ntBASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 MIR3917-201ENST00000580971 93 ntBASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 AC068880.1-201ENST00000507289 2297 ntBASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 LINC00167-201ENST00000530583 1419 ntBASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
SH3RF1Q7Z6J0 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.75■□□□□ 0.91
SH3RF1Q7Z6J0 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.75■□□□□ 0.91
SH3RF1Q7Z6J0 Z83836.1-201ENST00000624605 1642 ntBASIC20.75■□□□□ 0.91
SH3RF1Q7Z6J0 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SH3RF1Q7Z6J0 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SH3RF1Q7Z6J0 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SH3RF1Q7Z6J0 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SH3RF1Q7Z6J0 MIR574-201ENST00000385209 96 ntBASIC20.75■□□□□ 0.91
SH3RF1Q7Z6J0 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SH3RF1Q7Z6J0 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.75■□□□□ 0.91
SH3RF1Q7Z6J0 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms