Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 AP000550.4-202ENST00000639755 178 ntBASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.77■□□□□ 0.44
PTCHD3Q3KNS1 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTCHD3Q3KNS1 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.77■□□□□ 0.43
PTCHD3Q3KNS1 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.77■□□□□ 0.43
PTCHD3Q3KNS1 AL096828.2-201ENST00000567259 1965 ntBASIC17.77■□□□□ 0.43
PTCHD3Q3KNS1 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTCHD3Q3KNS1 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PTCHD3Q3KNS1 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PTCHD3Q3KNS1 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTCHD3Q3KNS1 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PTCHD3Q3KNS1 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 LINC01126-201ENST00000623515 1646 ntBASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 BCL2-203ENST00000589955 5011 ntBASIC17.76■□□□□ 0.43
PTCHD3Q3KNS1 AL024508.2-201ENST00000607749 1894 ntBASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 AC083849.1-201ENST00000615227 514 ntBASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 IER3-202ENST00000376377 1350 ntBASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PTCHD3Q3KNS1 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 AC005332.1-201ENST00000577698 1310 ntBASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 LINC01311-201ENST00000565162 1445 ntBASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 AL133373.2-201ENST00000623187 2828 ntBASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 VENTXP5-201ENST00000523979 775 ntBASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.74■□□□□ 0.43
PTCHD3Q3KNS1 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms