Protein–RNA interactions for Protein: Q2KHR2

RFX7, DNA-binding protein RFX7, humanhuman

Predictions only

Length 1,363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX7Q2KHR2 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
RFX7Q2KHR2 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 AC104819.1-201ENST00000504587 486 ntBASIC21.9■■□□□ 1.1
RFX7Q2KHR2 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.9■■□□□ 1.1
RFX7Q2KHR2 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RFX7Q2KHR2 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
RFX7Q2KHR2 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.89■■□□□ 1.1
RFX7Q2KHR2 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.89■■□□□ 1.1
RFX7Q2KHR2 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
RFX7Q2KHR2 AKR1C7P-201ENST00000305623 895 ntBASIC21.89■■□□□ 1.1
RFX7Q2KHR2 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.89■■□□□ 1.1
RFX7Q2KHR2 AC009078.2-202ENST00000463353 338 ntBASIC21.89■■□□□ 1.1
RFX7Q2KHR2 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
RFX7Q2KHR2 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.89■■□□□ 1.1
RFX7Q2KHR2 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.89■■□□□ 1.1
RFX7Q2KHR2 AC138894.3-201ENST00000603787 634 ntBASIC21.89■■□□□ 1.1
RFX7Q2KHR2 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
RFX7Q2KHR2 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC21.89■■□□□ 1.1
RFX7Q2KHR2 AL353692.3-201ENST00000407031 1396 ntBASIC21.89■■□□□ 1.1
RFX7Q2KHR2 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
RFX7Q2KHR2 AC138028.4-201ENST00000564984 1845 ntBASIC21.89■■□□□ 1.09
RFX7Q2KHR2 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.89■■□□□ 1.09
RFX7Q2KHR2 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
RFX7Q2KHR2 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFX7Q2KHR2 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFX7Q2KHR2 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RFX7Q2KHR2 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 SLC25A6P5-201ENST00000435663 894 ntBASIC21.88■■□□□ 1.09
RFX7Q2KHR2 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 REXO1L9P-201ENST00000604264 2108 ntBASIC21.88■■□□□ 1.09
RFX7Q2KHR2 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.88■■□□□ 1.09
RFX7Q2KHR2 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 AL121772.3-201ENST00000610840 674 ntBASIC21.87■■□□□ 1.09
RFX7Q2KHR2 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RFX7Q2KHR2 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms