Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 AC009102.3-201ENST00000623118 1491 ntBASIC20.99■□□□□ 0.95
SF3A1Q15459 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
SF3A1Q15459 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SF3A1Q15459 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.99■□□□□ 0.95
SF3A1Q15459 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.98■□□□□ 0.95
SF3A1Q15459 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SF3A1Q15459 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.98■□□□□ 0.95
SF3A1Q15459 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.98■□□□□ 0.95
SF3A1Q15459 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SF3A1Q15459 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SF3A1Q15459 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SF3A1Q15459 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.98■□□□□ 0.95
SF3A1Q15459 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.98■□□□□ 0.95
SF3A1Q15459 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.98■□□□□ 0.95
SF3A1Q15459 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.98■□□□□ 0.95
SF3A1Q15459 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.98■□□□□ 0.95
SF3A1Q15459 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SF3A1Q15459 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SF3A1Q15459 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SF3A1Q15459 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SF3A1Q15459 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SF3A1Q15459 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SF3A1Q15459 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.98■□□□□ 0.95
SF3A1Q15459 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SF3A1Q15459 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.98■□□□□ 0.95
SF3A1Q15459 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SF3A1Q15459 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
SF3A1Q15459 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SF3A1Q15459 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SF3A1Q15459 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.98■□□□□ 0.95
SF3A1Q15459 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SF3A1Q15459 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.97■□□□□ 0.95
SF3A1Q15459 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SF3A1Q15459 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SF3A1Q15459 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SF3A1Q15459 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.97■□□□□ 0.95
SF3A1Q15459 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SF3A1Q15459 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.97■□□□□ 0.95
SF3A1Q15459 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SF3A1Q15459 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SF3A1Q15459 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SF3A1Q15459 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SF3A1Q15459 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
SF3A1Q15459 MIR149-201ENST00000384879 89 ntBASIC20.97■□□□□ 0.95
SF3A1Q15459 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SF3A1Q15459 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SF3A1Q15459 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.97■□□□□ 0.95
SF3A1Q15459 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.97■□□□□ 0.95
SF3A1Q15459 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.97■□□□□ 0.95
SF3A1Q15459 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SF3A1Q15459 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SF3A1Q15459 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SF3A1Q15459 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
SF3A1Q15459 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SF3A1Q15459 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.97■□□□□ 0.95
SF3A1Q15459 AC134043.2-201ENST00000624206 2238 ntBASIC20.97■□□□□ 0.95
SF3A1Q15459 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.97■□□□□ 0.95
SF3A1Q15459 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SF3A1Q15459 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.97■□□□□ 0.95
SF3A1Q15459 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.96■□□□□ 0.95
SF3A1Q15459 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 FLJ13224-201ENST00000313737 1514 ntBASIC20.96■□□□□ 0.95
SF3A1Q15459 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SF3A1Q15459 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.96■□□□□ 0.95
SF3A1Q15459 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.96■□□□□ 0.95
SF3A1Q15459 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.96■□□□□ 0.95
SF3A1Q15459 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.96■□□□□ 0.95
SF3A1Q15459 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.96■□□□□ 0.95
SF3A1Q15459 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SF3A1Q15459 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SF3A1Q15459 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SF3A1Q15459 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
SF3A1Q15459 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms