Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.09■□□□□ 0.65
LIG3P49916 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
LIG3P49916 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.09■□□□□ 0.65
LIG3P49916 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.09■□□□□ 0.65
LIG3P49916 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.09■□□□□ 0.65
LIG3P49916 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.09■□□□□ 0.65
LIG3P49916 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 RCN1P1-201ENST00000400413 996 ntBASIC19.09■□□□□ 0.65
LIG3P49916 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.09■□□□□ 0.65
LIG3P49916 TSPY21P-201ENST00000433481 731 ntBASIC19.09■□□□□ 0.65
LIG3P49916 TSPY23P-201ENST00000440136 739 ntBASIC19.09■□□□□ 0.65
LIG3P49916 CCR12P-201ENST00000446203 998 ntBASIC19.09■□□□□ 0.65
LIG3P49916 AC128688.1-201ENST00000487626 519 ntBASIC19.09■□□□□ 0.65
LIG3P49916 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.09■□□□□ 0.65
LIG3P49916 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.09■□□□□ 0.65
LIG3P49916 AC116562.4-202ENST00000641738 218 ntBASIC19.09■□□□□ 0.65
LIG3P49916 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
LIG3P49916 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
LIG3P49916 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.09■□□□□ 0.65
LIG3P49916 AC134043.2-201ENST00000624206 2238 ntBASIC19.09■□□□□ 0.65
LIG3P49916 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.09■□□□□ 0.65
LIG3P49916 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.09■□□□□ 0.65
LIG3P49916 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.09■□□□□ 0.65
LIG3P49916 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIG3P49916 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LIG3P49916 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.08■□□□□ 0.65
LIG3P49916 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIG3P49916 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.08■□□□□ 0.65
LIG3P49916 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIG3P49916 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LIG3P49916 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIG3P49916 AC135776.1-201ENST00000319817 2481 ntBASIC19.08■□□□□ 0.65
LIG3P49916 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.08■□□□□ 0.64
LIG3P49916 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.08■□□□□ 0.64
LIG3P49916 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIG3P49916 SLC25A3P1-201ENST00000443844 931 ntBASIC19.08■□□□□ 0.64
LIG3P49916 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
LIG3P49916 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.08■□□□□ 0.64
LIG3P49916 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIG3P49916 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.08■□□□□ 0.64
LIG3P49916 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIG3P49916 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
LIG3P49916 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.08■□□□□ 0.64
LIG3P49916 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIG3P49916 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIG3P49916 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIG3P49916 AC012317.2-201ENST00000623305 2251 ntBASIC19.08■□□□□ 0.64
LIG3P49916 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
LIG3P49916 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
LIG3P49916 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.08■□□□□ 0.64
LIG3P49916 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.08■□□□□ 0.64
LIG3P49916 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIG3P49916 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIG3P49916 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIG3P49916 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.07■□□□□ 0.64
LIG3P49916 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.07■□□□□ 0.64
LIG3P49916 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 CICP6-201ENST00000457191 2729 ntBASIC19.07■□□□□ 0.64
LIG3P49916 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.07■□□□□ 0.64
LIG3P49916 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
LIG3P49916 AL023803.3-201ENST00000615559 522 ntBASIC19.07■□□□□ 0.64
LIG3P49916 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
LIG3P49916 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.07■□□□□ 0.64
LIG3P49916 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIG3P49916 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
LIG3P49916 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIG3P49916 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms