Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CDX1P47902 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC14.84□□□□□ -0.03
CDX1P47902 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CDX1P47902 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC14.83□□□□□ -0.03
CDX1P47902 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CDX1P47902 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CDX1P47902 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC14.83□□□□□ -0.03
CDX1P47902 Z98044.1-201ENST00000632503 1764 ntBASIC14.83□□□□□ -0.03
CDX1P47902 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CDX1P47902 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CDX1P47902 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
CDX1P47902 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CDX1P47902 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC14.83□□□□□ -0.04
CDX1P47902 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC14.83□□□□□ -0.04
CDX1P47902 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC14.83□□□□□ -0.04
CDX1P47902 RCN1P1-201ENST00000400413 996 ntBASIC14.83□□□□□ -0.04
CDX1P47902 AL137013.1-201ENST00000432946 1228 ntBASIC14.83□□□□□ -0.04
CDX1P47902 TSPY21P-201ENST00000433481 731 ntBASIC14.83□□□□□ -0.04
CDX1P47902 SLC25A3P1-201ENST00000443844 931 ntBASIC14.83□□□□□ -0.04
CDX1P47902 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CDX1P47902 TK2-213ENST00000563369 882 ntTSL 5 BASIC14.83□□□□□ -0.04
CDX1P47902 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC14.83□□□□□ -0.04
CDX1P47902 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 AC010653.2-201ENST00000623505 997 ntBASIC14.83□□□□□ -0.04
CDX1P47902 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC14.83□□□□□ -0.04
CDX1P47902 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CDX1P47902 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
CDX1P47902 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CDX1P47902 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC14.83□□□□□ -0.04
CDX1P47902 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC14.83□□□□□ -0.04
CDX1P47902 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC14.83□□□□□ -0.04
CDX1P47902 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CDX1P47902 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CDX1P47902 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC14.82□□□□□ -0.04
CDX1P47902 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CDX1P47902 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
CDX1P47902 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC14.82□□□□□ -0.04
CDX1P47902 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CDX1P47902 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CDX1P47902 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 LIN28AP1-201ENST00000429574 405 ntBASIC14.82□□□□□ -0.04
CDX1P47902 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CDX1P47902 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC14.82□□□□□ -0.04
CDX1P47902 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC14.82□□□□□ -0.04
CDX1P47902 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC14.82□□□□□ -0.04
CDX1P47902 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CDX1P47902 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC14.82□□□□□ -0.04
CDX1P47902 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CDX1P47902 KRT8P11-201ENST00000409686 1436 ntBASIC14.82□□□□□ -0.04
CDX1P47902 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC14.82□□□□□ -0.04
CDX1P47902 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CDX1P47902 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
CDX1P47902 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC14.82□□□□□ -0.04
CDX1P47902 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CDX1P47902 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CDX1P47902 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC14.81□□□□□ -0.04
CDX1P47902 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC14.81□□□□□ -0.04
CDX1P47902 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CDX1P47902 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms