Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.87■□□□□ 0.61
PTPN9P43378 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTPN9P43378 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PTPN9P43378 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.86■□□□□ 0.61
PTPN9P43378 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.86■□□□□ 0.61
PTPN9P43378 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PTPN9P43378 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.86■□□□□ 0.61
PTPN9P43378 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.86■□□□□ 0.61
PTPN9P43378 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 KRT18P55-202ENST00000578578 1546 ntBASIC18.86■□□□□ 0.61
PTPN9P43378 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
PTPN9P43378 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
PTPN9P43378 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
PTPN9P43378 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.86■□□□□ 0.61
PTPN9P43378 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.86■□□□□ 0.61
PTPN9P43378 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.86■□□□□ 0.61
PTPN9P43378 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.86■□□□□ 0.61
PTPN9P43378 KRT18P65-201ENST00000439811 1286 ntBASIC18.86■□□□□ 0.61
PTPN9P43378 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
PTPN9P43378 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.86■□□□□ 0.61
PTPN9P43378 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PTPN9P43378 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.86■□□□□ 0.61
PTPN9P43378 GPR32P1-201ENST00000601788 811 ntBASIC18.86■□□□□ 0.61
PTPN9P43378 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.86■□□□□ 0.61
PTPN9P43378 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.86■□□□□ 0.61
PTPN9P43378 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PTPN9P43378 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PTPN9P43378 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PTPN9P43378 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTPN9P43378 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
PTPN9P43378 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
PTPN9P43378 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.85■□□□□ 0.61
PTPN9P43378 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.85■□□□□ 0.61
PTPN9P43378 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
PTPN9P43378 AC020763.4-201ENST00000623414 4170 ntBASIC18.85■□□□□ 0.61
PTPN9P43378 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
PTPN9P43378 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.85■□□□□ 0.61
PTPN9P43378 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.85■□□□□ 0.61
PTPN9P43378 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.85■□□□□ 0.61
PTPN9P43378 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.85■□□□□ 0.61
PTPN9P43378 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.85■□□□□ 0.61
PTPN9P43378 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
PTPN9P43378 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
PTPN9P43378 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.85■□□□□ 0.61
PTPN9P43378 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
PTPN9P43378 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
PTPN9P43378 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.85■□□□□ 0.61
PTPN9P43378 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTPN9P43378 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.84■□□□□ 0.61
PTPN9P43378 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.84■□□□□ 0.61
PTPN9P43378 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.84■□□□□ 0.61
PTPN9P43378 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.84■□□□□ 0.61
PTPN9P43378 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.84■□□□□ 0.61
PTPN9P43378 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.84■□□□□ 0.61
PTPN9P43378 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
PTPN9P43378 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTPN9P43378 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms