Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC13.68□□□□□ -0.22
HLA-DQA1P01909 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HLA-DQA1P01909 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 AL096828.2-201ENST00000567259 1965 ntBASIC13.67□□□□□ -0.22
HLA-DQA1P01909 RCC2P6-201ENST00000526625 1557 ntBASIC13.67□□□□□ -0.22
HLA-DQA1P01909 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 TPR-209ENST00000613151 2478 ntTSL 5 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 BET1L-204ENST00000410108 637 ntTSL 3 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 AC007322.1-201ENST00000426983 750 ntBASIC13.67□□□□□ -0.22
HLA-DQA1P01909 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 C2orf69P4-201ENST00000565394 541 ntBASIC13.67□□□□□ -0.22
HLA-DQA1P01909 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 AC069236.1-201ENST00000604339 616 ntBASIC13.67□□□□□ -0.22
HLA-DQA1P01909 AC016405.3-201ENST00000607710 860 ntBASIC13.67□□□□□ -0.22
HLA-DQA1P01909 MDK-213ENST00000617138 635 ntTSL 2 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 AC231657.2-201ENST00000624556 255 ntBASIC13.67□□□□□ -0.22
HLA-DQA1P01909 AC008694.1-202ENST00000636953 945 ntBASIC13.67□□□□□ -0.22
HLA-DQA1P01909 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 AC105020.1-201ENST00000435356 2205 ntBASIC13.67□□□□□ -0.22
HLA-DQA1P01909 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC13.67□□□□□ -0.22
HLA-DQA1P01909 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 AL138688.1-201ENST00000624851 1594 ntBASIC13.66□□□□□ -0.22
HLA-DQA1P01909 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 AC063926.3-201ENST00000624734 5658 ntBASIC13.66□□□□□ -0.22
HLA-DQA1P01909 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms