Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
LDB3O75112 AL354751.1-201ENST00000412768 1863 ntBASIC17.09■□□□□ 0.33
LDB3O75112 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.09■□□□□ 0.33
LDB3O75112 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.09■□□□□ 0.33
LDB3O75112 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
LDB3O75112 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB3O75112 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.08■□□□□ 0.33
LDB3O75112 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.08■□□□□ 0.33
LDB3O75112 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LDB3O75112 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LDB3O75112 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
LDB3O75112 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.08■□□□□ 0.33
LDB3O75112 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.08■□□□□ 0.33
LDB3O75112 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LDB3O75112 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.08■□□□□ 0.33
LDB3O75112 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LDB3O75112 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.08■□□□□ 0.33
LDB3O75112 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.08■□□□□ 0.33
LDB3O75112 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LDB3O75112 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.08■□□□□ 0.32
LDB3O75112 AC005332.1-201ENST00000577698 1310 ntBASIC17.08■□□□□ 0.32
LDB3O75112 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.08■□□□□ 0.32
LDB3O75112 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.08■□□□□ 0.32
LDB3O75112 FAM86EP-206ENST00000510506 987 ntBASIC17.08■□□□□ 0.32
LDB3O75112 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.08■□□□□ 0.32
LDB3O75112 AL136038.3-201ENST00000561909 1096 ntBASIC17.08■□□□□ 0.32
LDB3O75112 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.08■□□□□ 0.32
LDB3O75112 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.08■□□□□ 0.32
LDB3O75112 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
LDB3O75112 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
LDB3O75112 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 AL390961.4-201ENST00000623958 2535 ntBASIC17.08■□□□□ 0.32
LDB3O75112 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.08■□□□□ 0.32
LDB3O75112 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.08■□□□□ 0.32
LDB3O75112 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB3O75112 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.07■□□□□ 0.32
LDB3O75112 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.07■□□□□ 0.32
LDB3O75112 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LDB3O75112 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.07■□□□□ 0.32
LDB3O75112 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
LDB3O75112 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.07■□□□□ 0.32
LDB3O75112 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.07■□□□□ 0.32
LDB3O75112 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.07■□□□□ 0.32
LDB3O75112 RNF126P1-202ENST00000569893 925 ntBASIC17.07■□□□□ 0.32
LDB3O75112 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.07■□□□□ 0.32
LDB3O75112 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
LDB3O75112 AC008687.5-201ENST00000593746 558 ntBASIC17.07■□□□□ 0.32
LDB3O75112 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LDB3O75112 LINC00602-201ENST00000629776 2065 ntBASIC17.07■□□□□ 0.32
LDB3O75112 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.07■□□□□ 0.32
LDB3O75112 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.07■□□□□ 0.32
LDB3O75112 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB3O75112 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.07■□□□□ 0.32
LDB3O75112 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.06■□□□□ 0.32
LDB3O75112 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
LDB3O75112 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
LDB3O75112 KRT89P-201ENST00000620027 1478 ntBASIC17.06■□□□□ 0.32
LDB3O75112 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.06■□□□□ 0.32
LDB3O75112 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.06■□□□□ 0.32
LDB3O75112 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LDB3O75112 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms