Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SNX3O60493 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SNX3O60493 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SNX3O60493 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
SNX3O60493 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SNX3O60493 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
SNX3O60493 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SNX3O60493 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SNX3O60493 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SNX3O60493 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 AC092368.3-202ENST00000574180 1591 ntBASIC17.89■□□□□ 0.45
SNX3O60493 AC099343.3-201ENST00000605834 2503 ntBASIC17.89■□□□□ 0.45
SNX3O60493 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.89■□□□□ 0.45
SNX3O60493 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 DUSP5P2-201ENST00000426873 1033 ntBASIC17.89■□□□□ 0.45
SNX3O60493 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC17.89■□□□□ 0.45
SNX3O60493 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.89■□□□□ 0.45
SNX3O60493 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC17.89■□□□□ 0.45
SNX3O60493 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
SNX3O60493 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
SNX3O60493 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SNX3O60493 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.89■□□□□ 0.45
SNX3O60493 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.88■□□□□ 0.45
SNX3O60493 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.88■□□□□ 0.45
SNX3O60493 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.88■□□□□ 0.45
SNX3O60493 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.88■□□□□ 0.45
SNX3O60493 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.88■□□□□ 0.45
SNX3O60493 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.88■□□□□ 0.45
SNX3O60493 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 SDHAP2-201ENST00000455183 2001 ntBASIC17.88■□□□□ 0.45
SNX3O60493 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.88■□□□□ 0.45
SNX3O60493 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.88■□□□□ 0.45
SNX3O60493 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.88■□□□□ 0.45
SNX3O60493 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
SNX3O60493 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SNX3O60493 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SNX3O60493 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.88■□□□□ 0.45
SNX3O60493 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 KRT8P50-201ENST00000562022 1438 ntBASIC17.88■□□□□ 0.45
SNX3O60493 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
SNX3O60493 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SNX3O60493 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.87■□□□□ 0.45
SNX3O60493 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.87■□□□□ 0.45
SNX3O60493 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC17.87■□□□□ 0.45
SNX3O60493 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.87■□□□□ 0.45
SNX3O60493 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.87■□□□□ 0.45
SNX3O60493 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
SNX3O60493 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.87■□□□□ 0.45
SNX3O60493 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.87■□□□□ 0.45
SNX3O60493 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SNX3O60493 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.87■□□□□ 0.45
SNX3O60493 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SNX3O60493 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.86■□□□□ 0.45
SNX3O60493 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SNX3O60493 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms