Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 ME3-201ENST00000323418 1068 ntTSL 5 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 TREX2-204ENST00000370212 861 ntTSL 5 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 AC004911.1-201ENST00000416316 871 ntBASIC13.3□□□□□ -0.28
SMKR1H3BMG3 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 AF201337.1-201ENST00000520239 748 ntBASIC13.3□□□□□ -0.28
SMKR1H3BMG3 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SMKR1H3BMG3 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 GMCL1P1-201ENST00000463439 1581 ntBASIC13.29□□□□□ -0.28
SMKR1H3BMG3 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 AC120498.8-201ENST00000614275 531 ntBASIC13.29□□□□□ -0.28
SMKR1H3BMG3 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SMKR1H3BMG3 RCC2P3-201ENST00000418112 1537 ntBASIC13.29□□□□□ -0.28
SMKR1H3BMG3 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC13.28□□□□□ -0.28
SMKR1H3BMG3 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms