Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL4A3BPQ9Y5P4 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A3BPQ9Y5P4 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.33■□□□□ 0.85
COL4A3BPQ9Y5P4 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.33■□□□□ 0.85
COL4A3BPQ9Y5P4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
COL4A3BPQ9Y5P4 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A3BPQ9Y5P4 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A3BPQ9Y5P4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A3BPQ9Y5P4 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
COL4A3BPQ9Y5P4 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.33■□□□□ 0.85
COL4A3BPQ9Y5P4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.33■□□□□ 0.85
COL4A3BPQ9Y5P4 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.33■□□□□ 0.85
COL4A3BPQ9Y5P4 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL4A3BPQ9Y5P4 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
COL4A3BPQ9Y5P4 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A3BPQ9Y5P4 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A3BPQ9Y5P4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
COL4A3BPQ9Y5P4 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A3BPQ9Y5P4 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.33■□□□□ 0.84
COL4A3BPQ9Y5P4 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL4A3BPQ9Y5P4 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL4A3BPQ9Y5P4 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 RNF126P1-202ENST00000569893 925 ntBASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 ESPNP-201ENST00000270691 2015 ntBASIC20.31■□□□□ 0.84
COL4A3BPQ9Y5P4 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 NOC2LP1-202ENST00000452600 2235 ntBASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 ATP5G2P1-201ENST00000433580 426 ntBASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 HCG4P8-203ENST00000443049 980 ntBASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 BX276092.5-203ENST00000456199 560 ntBASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 AL121672.3-201ENST00000608644 468 ntBASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A3BPQ9Y5P4 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms