Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ZC3H4Q9UPT8 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
ZC3H4Q9UPT8 AC079776.2-201ENST00000641154 1609 ntBASIC21.92■■□□□ 1.1
ZC3H4Q9UPT8 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ZC3H4Q9UPT8 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC21.92■■□□□ 1.1
ZC3H4Q9UPT8 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.92■■□□□ 1.1
ZC3H4Q9UPT8 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.91■■□□□ 1.1
ZC3H4Q9UPT8 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 TSEN15P1-201ENST00000423257 515 ntBASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 AC092474.2-201ENST00000424288 719 ntBASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.9■■□□□ 1.1
ZC3H4Q9UPT8 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 PNKD-204ENST00000436005 978 ntTSL 5 BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 PAWRP1-201ENST00000451083 565 ntBASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 AP000344.2-201ENST00000512987 629 ntBASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 METTL23-205ENST00000588302 925 ntTSL 5 BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 AC092865.6-201ENST00000642101 219 ntBASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
ZC3H4Q9UPT8 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.89■■□□□ 1.09
ZC3H4Q9UPT8 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
ZC3H4Q9UPT8 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.88■■□□□ 1.09
ZC3H4Q9UPT8 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.88■■□□□ 1.09
ZC3H4Q9UPT8 AL020996.1-203ENST00000536896 2307 ntBASIC21.88■■□□□ 1.09
ZC3H4Q9UPT8 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZC3H4Q9UPT8 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
ZC3H4Q9UPT8 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
ZC3H4Q9UPT8 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC21.88■■□□□ 1.09
ZC3H4Q9UPT8 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC21.88■■□□□ 1.09
ZC3H4Q9UPT8 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.88■■□□□ 1.09
ZC3H4Q9UPT8 SDCCAG3P1-201ENST00000589292 1150 ntBASIC21.88■■□□□ 1.09
ZC3H4Q9UPT8 AC093028.1-201ENST00000622998 982 ntBASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms