Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 AL354751.1-201ENST00000412768 1863 ntBASIC19.4■□□□□ 0.7
SIX4Q9UIU6 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 TOB2P1-201ENST00000469761 992 ntBASIC19.4■□□□□ 0.7
SIX4Q9UIU6 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX4Q9UIU6 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
SIX4Q9UIU6 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SIX4Q9UIU6 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 MTCL1P1-201ENST00000446207 792 ntBASIC19.39■□□□□ 0.69
SIX4Q9UIU6 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 DUTP2-201ENST00000519164 463 ntBASIC19.39■□□□□ 0.69
SIX4Q9UIU6 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.39■□□□□ 0.69
SIX4Q9UIU6 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 ABALON-201ENST00000629058 1903 ntBASIC19.39■□□□□ 0.69
SIX4Q9UIU6 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SIX4Q9UIU6 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 LINC00265-3P-201ENST00000447588 903 ntBASIC19.38■□□□□ 0.69
SIX4Q9UIU6 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 AC233702.3-201ENST00000578656 1387 ntBASIC19.38■□□□□ 0.69
SIX4Q9UIU6 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX4Q9UIU6 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SIX4Q9UIU6 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.37■□□□□ 0.69
SIX4Q9UIU6 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.37■□□□□ 0.69
SIX4Q9UIU6 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SIX4Q9UIU6 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.37■□□□□ 0.69
SIX4Q9UIU6 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SIX4Q9UIU6 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms