Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHMP1AQ9HD42 HTR7P1-201ENST00000538670 1336 ntBASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 SERF2-207ENST00000409614 582 ntTSL 2 BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 AC004951.3-201ENST00000418645 1148 ntBASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 AC004980.1-204ENST00000429707 299 ntBASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC15.68■□□□□ 0.1
CHMP1AQ9HD42 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 AL357033.4-201ENST00000617703 1807 ntBASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 TBCB-214ENST00000629269 413 ntTSL 5 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 RCC2P3-201ENST00000418112 1537 ntBASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
CHMP1AQ9HD42 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CHMP1AQ9HD42 ISG20-202ENST00000379224 540 ntTSL 3 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms