Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
NKX3-1Q99801 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
NKX3-1Q99801 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
NKX3-1Q99801 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
NKX3-1Q99801 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
NKX3-1Q99801 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
NKX3-1Q99801 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC15.89■□□□□ 0.13
NKX3-1Q99801 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
NKX3-1Q99801 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC15.89■□□□□ 0.13
NKX3-1Q99801 B3GAT3P1-201ENST00000471720 806 ntBASIC15.89■□□□□ 0.13
NKX3-1Q99801 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC15.89■□□□□ 0.13
NKX3-1Q99801 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC15.89■□□□□ 0.13
NKX3-1Q99801 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
NKX3-1Q99801 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.88■□□□□ 0.13
NKX3-1Q99801 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 PHGDH-209ENST00000641074 1780 ntBASIC15.88■□□□□ 0.13
NKX3-1Q99801 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 MESTP1-201ENST00000404287 994 ntBASIC15.88■□□□□ 0.13
NKX3-1Q99801 AL596275.1-201ENST00000423464 877 ntBASIC15.88■□□□□ 0.13
NKX3-1Q99801 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 AF186192.3-201ENST00000583427 947 ntBASIC15.88■□□□□ 0.13
NKX3-1Q99801 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 AL353708.3-201ENST00000610272 989 ntBASIC15.88■□□□□ 0.13
NKX3-1Q99801 MIR6786-201ENST00000616843 113 ntBASIC15.88■□□□□ 0.13
NKX3-1Q99801 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 AC130371.2-201ENST00000619443 611 ntBASIC15.88■□□□□ 0.13
NKX3-1Q99801 AL031985.4-201ENST00000642138 673 ntBASIC15.88■□□□□ 0.13
NKX3-1Q99801 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
NKX3-1Q99801 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
NKX3-1Q99801 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
NKX3-1Q99801 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
NKX3-1Q99801 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.87■□□□□ 0.13
NKX3-1Q99801 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
NKX3-1Q99801 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.87■□□□□ 0.13
NKX3-1Q99801 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
NKX3-1Q99801 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms