Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
NR1H4Q96RI1 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
NR1H4Q96RI1 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
NR1H4Q96RI1 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.15■□□□□ 0.34
NR1H4Q96RI1 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
NR1H4Q96RI1 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NR1H4Q96RI1 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
NR1H4Q96RI1 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.14■□□□□ 0.34
NR1H4Q96RI1 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.14■□□□□ 0.34
NR1H4Q96RI1 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.14■□□□□ 0.33
NR1H4Q96RI1 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 PCDHB17P-201ENST00000539533 2393 ntBASIC17.13■□□□□ 0.33
NR1H4Q96RI1 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 LINC00554-201ENST00000564841 3011 ntBASIC17.13■□□□□ 0.33
NR1H4Q96RI1 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 AC026691.1-201ENST00000602502 2017 ntBASIC17.13■□□□□ 0.33
NR1H4Q96RI1 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 KRT8P8-201ENST00000434750 1448 ntBASIC17.13■□□□□ 0.33
NR1H4Q96RI1 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.13■□□□□ 0.33
NR1H4Q96RI1 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 TERF1P5-201ENST00000477545 1207 ntBASIC17.12■□□□□ 0.33
NR1H4Q96RI1 DBI-210ENST00000542275 757 ntTSL 5 BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 AC010536.3-201ENST00000620306 533 ntBASIC17.12■□□□□ 0.33
NR1H4Q96RI1 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC17.12■□□□□ 0.33
NR1H4Q96RI1 AC008741.2-201ENST00000612792 3115 ntBASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms