Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 AC004408.2-201ENST00000623613 2777 ntBASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLIP3Q96DZ5 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 PVRIG2P-201ENST00000435460 978 ntBASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 MIR3180-4-201ENST00000582223 153 ntBASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 AC092119.3-201ENST00000612618 583 ntBASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP3Q96DZ5 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 AC093525.10-201ENST00000625130 1569 ntBASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 MIR662-201ENST00000384847 95 ntBASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 KRT8P26-201ENST00000534154 1276 ntBASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 AC092329.2-201ENST00000598402 547 ntBASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 BX323043.1-201ENST00000641006 1765 ntBASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.53■□□□□ 0.4
CLIP3Q96DZ5 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms