Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP4Q8N3C7 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 AC084018.2-201ENST00000613093 2607 ntBASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP4Q8N3C7 AC093677.2-201ENST00000600169 1863 ntBASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 AL023803.3-201ENST00000615559 522 ntBASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 AC034236.2-201ENST00000606662 1610 ntBASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP4Q8N3C7 KRT8P50-201ENST00000562022 1438 ntBASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 UNC93B2-201ENST00000285383 730 ntBASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 MIR718-201ENST00000390190 70 ntBASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms