Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 PAUPAR-201ENST00000630360 2965 ntBASIC11.35□□□□□ -0.59
LINC00643Q86TS7 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 AC126177.1-201ENST00000547829 2218 ntBASIC11.35□□□□□ -0.59
LINC00643Q86TS7 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 KRT8P17-201ENST00000453110 1448 ntBASIC11.35□□□□□ -0.59
LINC00643Q86TS7 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00643Q86TS7 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 AL096828.2-201ENST00000567259 1965 ntBASIC11.34□□□□□ -0.59
LINC00643Q86TS7 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 AC061975.6-201ENST00000579045 1553 ntBASIC11.34□□□□□ -0.59
LINC00643Q86TS7 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
LINC00643Q86TS7 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms