Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDH1Q08174 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDH1Q08174 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.55■□□□□ 0.4
PCDH1Q08174 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 AC034232.1-201ENST00000506026 1064 ntBASIC17.55■□□□□ 0.4
PCDH1Q08174 AC113404.2-201ENST00000507884 177 ntBASIC17.55■□□□□ 0.4
PCDH1Q08174 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PCDH1Q08174 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PCDH1Q08174 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.55■□□□□ 0.4
PCDH1Q08174 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDH1Q08174 AL157888.1-201ENST00000631930 593 ntBASIC17.55■□□□□ 0.4
PCDH1Q08174 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
PCDH1Q08174 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDH1Q08174 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
PCDH1Q08174 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
PCDH1Q08174 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDH1Q08174 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.55■□□□□ 0.4
PCDH1Q08174 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.55■□□□□ 0.4
PCDH1Q08174 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PCDH1Q08174 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PCDH1Q08174 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDH1Q08174 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.54■□□□□ 0.4
PCDH1Q08174 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PCDH1Q08174 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.54■□□□□ 0.4
PCDH1Q08174 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 BX664615.1-201ENST00000443558 458 ntBASIC17.54■□□□□ 0.4
PCDH1Q08174 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.54■□□□□ 0.4
PCDH1Q08174 COX11P1-201ENST00000489116 835 ntBASIC17.54■□□□□ 0.4
PCDH1Q08174 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PCDH1Q08174 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.54■□□□□ 0.4
PCDH1Q08174 AC005363.2-201ENST00000618631 242 ntBASIC17.54■□□□□ 0.4
PCDH1Q08174 AC133561.5-201ENST00000635547 218 ntBASIC17.54■□□□□ 0.4
PCDH1Q08174 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDH1Q08174 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
PCDH1Q08174 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.54■□□□□ 0.4
PCDH1Q08174 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
PCDH1Q08174 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDH1Q08174 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.54■□□□□ 0.4
PCDH1Q08174 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
PCDH1Q08174 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
PCDH1Q08174 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH1Q08174 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
PCDH1Q08174 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH1Q08174 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH1Q08174 KRT18P55-202ENST00000578578 1546 ntBASIC17.53■□□□□ 0.4
PCDH1Q08174 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH1Q08174 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH1Q08174 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDH1Q08174 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDH1Q08174 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
PCDH1Q08174 TERF1P1-201ENST00000311003 1181 ntBASIC17.53■□□□□ 0.4
PCDH1Q08174 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
PCDH1Q08174 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDH1Q08174 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH1Q08174 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDH1Q08174 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDH1Q08174 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.53■□□□□ 0.4
PCDH1Q08174 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
PCDH1Q08174 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
PCDH1Q08174 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PCDH1Q08174 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH1Q08174 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH1Q08174 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH1Q08174 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDH1Q08174 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms