Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP46P62068 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.1■□□□□ 0.65
USP46P62068 AC233702.3-201ENST00000578656 1387 ntBASIC19.1■□□□□ 0.65
USP46P62068 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP46P62068 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP46P62068 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP46P62068 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.1■□□□□ 0.65
USP46P62068 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.1■□□□□ 0.65
USP46P62068 AC113404.2-201ENST00000507884 177 ntBASIC19.1■□□□□ 0.65
USP46P62068 GUSBP12-201ENST00000513727 720 ntBASIC19.1■□□□□ 0.65
USP46P62068 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.1■□□□□ 0.65
USP46P62068 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.1■□□□□ 0.65
USP46P62068 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.1■□□□□ 0.65
USP46P62068 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP46P62068 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
USP46P62068 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
USP46P62068 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP46P62068 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
USP46P62068 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP46P62068 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP46P62068 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP46P62068 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP46P62068 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP46P62068 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.09■□□□□ 0.65
USP46P62068 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.09■□□□□ 0.65
USP46P62068 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.09■□□□□ 0.65
USP46P62068 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.09■□□□□ 0.65
USP46P62068 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.09■□□□□ 0.65
USP46P62068 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.09■□□□□ 0.65
USP46P62068 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
USP46P62068 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.09■□□□□ 0.65
USP46P62068 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP46P62068 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.09■□□□□ 0.65
USP46P62068 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP46P62068 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP46P62068 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.09■□□□□ 0.65
USP46P62068 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP46P62068 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP46P62068 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.09■□□□□ 0.65
USP46P62068 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP46P62068 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
USP46P62068 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP46P62068 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP46P62068 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP46P62068 LINC00167-201ENST00000530583 1419 ntBASIC19.08■□□□□ 0.65
USP46P62068 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
USP46P62068 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.08■□□□□ 0.65
USP46P62068 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.08■□□□□ 0.65
USP46P62068 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP46P62068 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP46P62068 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
USP46P62068 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
USP46P62068 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.08■□□□□ 0.65
USP46P62068 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP46P62068 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.08■□□□□ 0.64
USP46P62068 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.08■□□□□ 0.64
USP46P62068 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.08■□□□□ 0.64
USP46P62068 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 UNC93B7-201ENST00000509439 705 ntBASIC19.08■□□□□ 0.64
USP46P62068 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.08■□□□□ 0.64
USP46P62068 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.08■□□□□ 0.64
USP46P62068 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.08■□□□□ 0.64
USP46P62068 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.08■□□□□ 0.64
USP46P62068 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
USP46P62068 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.64
USP46P62068 AC093503.3-201ENST00000624917 2352 ntBASIC19.08■□□□□ 0.64
USP46P62068 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
USP46P62068 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP46P62068 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP46P62068 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP46P62068 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP46P62068 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
USP46P62068 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.07■□□□□ 0.64
USP46P62068 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.07■□□□□ 0.64
USP46P62068 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.07■□□□□ 0.64
USP46P62068 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP46P62068 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP46P62068 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.07■□□□□ 0.64
USP46P62068 NUS1P1-201ENST00000446295 882 ntBASIC19.07■□□□□ 0.64
USP46P62068 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
USP46P62068 AC074051.2-201ENST00000565115 352 ntBASIC19.07■□□□□ 0.64
USP46P62068 AC012615.1-201ENST00000565797 1299 ntBASIC19.07■□□□□ 0.64
USP46P62068 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.07■□□□□ 0.64
USP46P62068 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP46P62068 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.07■□□□□ 0.64
USP46P62068 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP46P62068 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
USP46P62068 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms