Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 NOC2LP1-202ENST00000452600 2235 ntBASIC19■□□□□ 0.63
HDAC4P56524 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19■□□□□ 0.63
HDAC4P56524 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDAC4P56524 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDAC4P56524 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19■□□□□ 0.63
HDAC4P56524 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19■□□□□ 0.63
HDAC4P56524 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
HDAC4P56524 HOMER2P1-201ENST00000455653 964 ntBASIC19■□□□□ 0.63
HDAC4P56524 AL359075.1-203ENST00000462729 1002 ntBASIC19■□□□□ 0.63
HDAC4P56524 DUX4L26-201ENST00000489078 1255 ntBASIC19■□□□□ 0.63
HDAC4P56524 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19■□□□□ 0.63
HDAC4P56524 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19■□□□□ 0.63
HDAC4P56524 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19■□□□□ 0.63
HDAC4P56524 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDAC4P56524 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19■□□□□ 0.63
HDAC4P56524 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19■□□□□ 0.63
HDAC4P56524 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
HDAC4P56524 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDAC4P56524 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19■□□□□ 0.63
HDAC4P56524 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19■□□□□ 0.63
HDAC4P56524 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
HDAC4P56524 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19■□□□□ 0.63
HDAC4P56524 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HDAC4P56524 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
HDAC4P56524 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.99■□□□□ 0.63
HDAC4P56524 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.99■□□□□ 0.63
HDAC4P56524 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.99■□□□□ 0.63
HDAC4P56524 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.99■□□□□ 0.63
HDAC4P56524 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
HDAC4P56524 HLA-F-220ENST00000434407 884 ntBASIC18.99■□□□□ 0.63
HDAC4P56524 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.99■□□□□ 0.63
HDAC4P56524 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.99■□□□□ 0.63
HDAC4P56524 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.99■□□□□ 0.63
HDAC4P56524 AL136038.4-201ENST00000603606 1261 ntBASIC18.99■□□□□ 0.63
HDAC4P56524 HYMAI.1-201ENST00000620949 238 ntBASIC18.99■□□□□ 0.63
HDAC4P56524 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.99■□□□□ 0.63
HDAC4P56524 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
HDAC4P56524 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.99■□□□□ 0.63
HDAC4P56524 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
HDAC4P56524 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
HDAC4P56524 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HDAC4P56524 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.98■□□□□ 0.63
HDAC4P56524 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
HDAC4P56524 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
HDAC4P56524 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
HDAC4P56524 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.98■□□□□ 0.63
HDAC4P56524 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.98■□□□□ 0.63
HDAC4P56524 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
HDAC4P56524 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.98■□□□□ 0.63
HDAC4P56524 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.98■□□□□ 0.63
HDAC4P56524 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.98■□□□□ 0.63
HDAC4P56524 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.98■□□□□ 0.63
HDAC4P56524 AC093010.1-201ENST00000473625 1624 ntBASIC18.98■□□□□ 0.63
HDAC4P56524 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.98■□□□□ 0.63
HDAC4P56524 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HDAC4P56524 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
HDAC4P56524 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.98■□□□□ 0.63
HDAC4P56524 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
HDAC4P56524 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HDAC4P56524 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms