Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LIM2P55344 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
LIM2P55344 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.26■□□□□ 0.35
LIM2P55344 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.26■□□□□ 0.35
LIM2P55344 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
LIM2P55344 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.26■□□□□ 0.35
LIM2P55344 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.26■□□□□ 0.35
LIM2P55344 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.26■□□□□ 0.35
LIM2P55344 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.26■□□□□ 0.35
LIM2P55344 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.26■□□□□ 0.35
LIM2P55344 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.26■□□□□ 0.35
LIM2P55344 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.26■□□□□ 0.35
LIM2P55344 NTF6B-201ENST00000591913 560 ntBASIC17.26■□□□□ 0.35
LIM2P55344 AL590326.2-201ENST00000625139 305 ntBASIC17.26■□□□□ 0.35
LIM2P55344 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.26■□□□□ 0.35
LIM2P55344 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
LIM2P55344 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.26■□□□□ 0.35
LIM2P55344 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.26■□□□□ 0.35
LIM2P55344 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIM2P55344 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LIM2P55344 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIM2P55344 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIM2P55344 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.25■□□□□ 0.35
LIM2P55344 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIM2P55344 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIM2P55344 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.25■□□□□ 0.35
LIM2P55344 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.25■□□□□ 0.35
LIM2P55344 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.25■□□□□ 0.35
LIM2P55344 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.25■□□□□ 0.35
LIM2P55344 AC083849.1-201ENST00000615227 514 ntBASIC17.25■□□□□ 0.35
LIM2P55344 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIM2P55344 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIM2P55344 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.25■□□□□ 0.35
LIM2P55344 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
LIM2P55344 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIM2P55344 PHGDH-209ENST00000641074 1780 ntBASIC17.25■□□□□ 0.35
LIM2P55344 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
LIM2P55344 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.25■□□□□ 0.35
LIM2P55344 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LIM2P55344 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.24■□□□□ 0.35
LIM2P55344 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.24■□□□□ 0.35
LIM2P55344 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.24■□□□□ 0.35
LIM2P55344 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.24■□□□□ 0.35
LIM2P55344 AC024563.2-201ENST00000603282 481 ntBASIC17.24■□□□□ 0.35
LIM2P55344 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.24■□□□□ 0.35
LIM2P55344 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
LIM2P55344 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LIM2P55344 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
LIM2P55344 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.24■□□□□ 0.35
LIM2P55344 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.24■□□□□ 0.35
LIM2P55344 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIM2P55344 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIM2P55344 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms