Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMK1P53667 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LIMK1P53667 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIMK1P53667 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LIMK1P53667 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
LIMK1P53667 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
LIMK1P53667 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LIMK1P53667 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.94■□□□□ 0.46
LIMK1P53667 HLA-J-201ENST00000462773 1622 ntBASIC17.94■□□□□ 0.46
LIMK1P53667 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.94■□□□□ 0.46
LIMK1P53667 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
LIMK1P53667 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.94■□□□□ 0.46
LIMK1P53667 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 DNAJB3-202ENST00000449667 1266 ntBASIC17.94■□□□□ 0.46
LIMK1P53667 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
LIMK1P53667 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.94■□□□□ 0.46
LIMK1P53667 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.94■□□□□ 0.46
LIMK1P53667 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.94■□□□□ 0.46
LIMK1P53667 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
LIMK1P53667 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.94■□□□□ 0.46
LIMK1P53667 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 AL049812.1-201ENST00000432563 2267 ntBASIC17.94■□□□□ 0.46
LIMK1P53667 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.94■□□□□ 0.46
LIMK1P53667 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
LIMK1P53667 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.94■□□□□ 0.46
LIMK1P53667 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.94■□□□□ 0.46
LIMK1P53667 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIMK1P53667 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
LIMK1P53667 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
LIMK1P53667 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.93■□□□□ 0.46
LIMK1P53667 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMK1P53667 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
LIMK1P53667 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
LIMK1P53667 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LIMK1P53667 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 RCN1P2-201ENST00000398357 915 ntBASIC17.93■□□□□ 0.46
LIMK1P53667 AP006288.1-201ENST00000446065 395 ntBASIC17.93■□□□□ 0.46
LIMK1P53667 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
LIMK1P53667 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.93■□□□□ 0.46
LIMK1P53667 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 AP001269.4-201ENST00000609611 512 ntBASIC17.93■□□□□ 0.46
LIMK1P53667 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LIMK1P53667 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.93■□□□□ 0.46
LIMK1P53667 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 AC034236.2-201ENST00000606662 1610 ntBASIC17.93■□□□□ 0.46
LIMK1P53667 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LIMK1P53667 AL512353.2-201ENST00000448759 1962 ntBASIC17.93■□□□□ 0.46
LIMK1P53667 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 SDHAP1-207ENST00000440850 2000 ntBASIC17.93■□□□□ 0.46
LIMK1P53667 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.93■□□□□ 0.46
LIMK1P53667 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIMK1P53667 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMK1P53667 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMK1P53667 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMK1P53667 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMK1P53667 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMK1P53667 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMK1P53667 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMK1P53667 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMK1P53667 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.92■□□□□ 0.46
LIMK1P53667 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LIMK1P53667 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMK1P53667 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LIMK1P53667 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMK1P53667 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMK1P53667 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.92■□□□□ 0.46
LIMK1P53667 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMK1P53667 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMK1P53667 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMK1P53667 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMK1P53667 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.92■□□□□ 0.46
LIMK1P53667 AC002347.1-201ENST00000569543 541 ntBASIC17.92■□□□□ 0.46
LIMK1P53667 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.92■□□□□ 0.46
LIMK1P53667 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
LIMK1P53667 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIMK1P53667 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIMK1P53667 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms