Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
HOXA1P49639 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC15.12■□□□□ 0.01
HOXA1P49639 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC15.12■□□□□ 0.01
HOXA1P49639 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC15.12■□□□□ 0.01
HOXA1P49639 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 TK2-208ENST00000545043 1120 ntTSL 2 BASIC15.12■□□□□ 0.01
HOXA1P49639 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC15.12■□□□□ 0.01
HOXA1P49639 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC15.12■□□□□ 0.01
HOXA1P49639 INO80E-214ENST00000620599 515 ntTSL 2 BASIC15.12■□□□□ 0.01
HOXA1P49639 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HOXA1P49639 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.12■□□□□ 0.01
HOXA1P49639 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 NBPF21P-201ENST00000425093 1451 ntBASIC15.12■□□□□ 0.01
HOXA1P49639 PCDHA1-201ENST00000378133 2726 ntBASIC15.12■□□□□ 0.01
HOXA1P49639 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HOXA1P49639 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 GNAS-203ENST00000306120 1878 ntBASIC15.12■□□□□ 0.01
HOXA1P49639 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
HOXA1P49639 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
HOXA1P49639 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HOXA1P49639 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HOXA1P49639 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXA1P49639 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.11■□□□□ 0.01
HOXA1P49639 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HOXA1P49639 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.11■□□□□ 0.01
HOXA1P49639 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXA1P49639 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.11■□□□□ 0.01
HOXA1P49639 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 MADD-208ENST00000405573 1823 ntTSL 5 BASIC15.11■□□□□ 0.01
HOXA1P49639 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
HOXA1P49639 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXA1P49639 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXA1P49639 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
HOXA1P49639 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC15.11■□□□□ 0.01
HOXA1P49639 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 THEM4-205ENST00000489410 643 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXA1P49639 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC15.11■□□□□ 0.01
HOXA1P49639 C1QL1P1-201ENST00000568105 661 ntBASIC15.11■□□□□ 0.01
HOXA1P49639 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXA1P49639 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXA1P49639 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 KLF2-202ENST00000592003 564 ntTSL 3 BASIC15.11■□□□□ 0.01
HOXA1P49639 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
HOXA1P49639 HLA-A-209ENST00000638375 975 ntBASIC15.11■□□□□ 0.01
HOXA1P49639 AC133041.1-202ENST00000642053 222 ntBASIC15.11■□□□□ 0.01
HOXA1P49639 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 KATNBL1P6-202ENST00000562413 1466 ntBASIC15.11■□□□□ 0.01
HOXA1P49639 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
HOXA1P49639 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXA1P49639 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.11■□□□□ 0.01
HOXA1P49639 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC15.11■□□□□ 0.01
HOXA1P49639 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HOXA1P49639 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.11■□□□□ 0.01
HOXA1P49639 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
HOXA1P49639 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.11■□□□□ 0.01
HOXA1P49639 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXA1P49639 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXA1P49639 AC005052.1-201ENST00000625181 2492 ntBASIC15.1■□□□□ 0.01
HOXA1P49639 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.1■□□□□ 0.01
HOXA1P49639 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
HOXA1P49639 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HOXA1P49639 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXA1P49639 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
HOXA1P49639 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXA1P49639 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HOXA1P49639 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXA1P49639 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
HOXA1P49639 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXA1P49639 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXA1P49639 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.1■□□□□ 0.01
HOXA1P49639 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HOXA1P49639 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXA1P49639 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.1■□□□□ 0.01
HOXA1P49639 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HOXA1P49639 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms