Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC22■■□□□ 1.11
BRCA1P38398 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC22■■□□□ 1.11
BRCA1P38398 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
BRCA1P38398 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
BRCA1P38398 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
BRCA1P38398 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
BRCA1P38398 METTL26-205ENST00000397666 726 ntTSL 2 BASIC22■■□□□ 1.11
BRCA1P38398 AC007274.1-201ENST00000439805 662 ntBASIC22■■□□□ 1.11
BRCA1P38398 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC22■■□□□ 1.11
BRCA1P38398 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC22■■□□□ 1.11
BRCA1P38398 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
BRCA1P38398 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
BRCA1P38398 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC22■■□□□ 1.11
BRCA1P38398 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC22■■□□□ 1.11
BRCA1P38398 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC22■■□□□ 1.11
BRCA1P38398 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
BRCA1P38398 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC22■■□□□ 1.11
BRCA1P38398 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC22■■□□□ 1.11
BRCA1P38398 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22■■□□□ 1.11
BRCA1P38398 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BRCA1P38398 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BRCA1P38398 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BRCA1P38398 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
BRCA1P38398 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
BRCA1P38398 AC004461.1-201ENST00000412461 403 ntBASIC21.99■■□□□ 1.11
BRCA1P38398 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
BRCA1P38398 RPS15P9-201ENST00000494093 319 ntBASIC21.99■■□□□ 1.11
BRCA1P38398 PUDP-206ENST00000540122 825 ntTSL 2 BASIC21.99■■□□□ 1.11
BRCA1P38398 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC21.99■■□□□ 1.11
BRCA1P38398 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BRCA1P38398 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC21.99■■□□□ 1.11
BRCA1P38398 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
BRCA1P38398 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
BRCA1P38398 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
BRCA1P38398 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.98■■□□□ 1.11
BRCA1P38398 RHOQP3-201ENST00000437982 621 ntBASIC21.98■■□□□ 1.11
BRCA1P38398 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC21.98■■□□□ 1.11
BRCA1P38398 PAWRP1-201ENST00000451083 565 ntBASIC21.98■■□□□ 1.11
BRCA1P38398 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC21.98■■□□□ 1.11
BRCA1P38398 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
BRCA1P38398 AC091812.2-201ENST00000619081 385 ntBASIC21.98■■□□□ 1.11
BRCA1P38398 AL513210.1-201ENST00000629608 234 ntBASIC21.98■■□□□ 1.11
BRCA1P38398 AC092902.6-201ENST00000641783 218 ntBASIC21.98■■□□□ 1.11
BRCA1P38398 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
BRCA1P38398 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
BRCA1P38398 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.98■■□□□ 1.11
BRCA1P38398 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.98■■□□□ 1.11
BRCA1P38398 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC21.98■■□□□ 1.11
BRCA1P38398 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
BRCA1P38398 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
BRCA1P38398 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.98■■□□□ 1.11
BRCA1P38398 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
BRCA1P38398 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
BRCA1P38398 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC21.98■■□□□ 1.11
BRCA1P38398 CD9-202ENST00000382515 1229 ntTSL 5 BASIC21.98■■□□□ 1.11
BRCA1P38398 MRPL20P1-201ENST00000400819 433 ntBASIC21.98■■□□□ 1.11
BRCA1P38398 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC21.98■■□□□ 1.11
BRCA1P38398 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
BRCA1P38398 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC21.98■■□□□ 1.11
BRCA1P38398 AC022145.2-201ENST00000598203 171 ntBASIC21.98■■□□□ 1.11
BRCA1P38398 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
BRCA1P38398 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
BRCA1P38398 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
BRCA1P38398 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
BRCA1P38398 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.97■■□□□ 1.11
BRCA1P38398 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
BRCA1P38398 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC21.97■■□□□ 1.11
BRCA1P38398 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
BRCA1P38398 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
BRCA1P38398 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC21.97■■□□□ 1.11
BRCA1P38398 FAM58CP-201ENST00000435741 640 ntBASIC21.97■■□□□ 1.11
BRCA1P38398 IGHV3-65-201ENST00000523210 341 ntBASIC21.97■■□□□ 1.11
BRCA1P38398 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
BRCA1P38398 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
BRCA1P38398 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
BRCA1P38398 MYLKP1-201ENST00000509077 1580 ntBASIC21.97■■□□□ 1.11
BRCA1P38398 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
BRCA1P38398 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC21.97■■□□□ 1.11
BRCA1P38398 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
BRCA1P38398 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BRCA1P38398 CD99-202ENST00000381180 530 ntTSL 2 BASIC21.96■■□□□ 1.11
BRCA1P38398 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.96■■□□□ 1.11
BRCA1P38398 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC21.96■■□□□ 1.11
BRCA1P38398 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC21.96■■□□□ 1.11
BRCA1P38398 AC068137.2-201ENST00000605408 478 ntBASIC21.96■■□□□ 1.11
BRCA1P38398 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC21.96■■□□□ 1.11
BRCA1P38398 AC009093.7-201ENST00000623853 1223 ntBASIC21.96■■□□□ 1.11
BRCA1P38398 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
BRCA1P38398 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.96■■□□□ 1.11
BRCA1P38398 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.96■■□□□ 1.11
BRCA1P38398 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BRCA1P38398 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
BRCA1P38398 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
BRCA1P38398 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
BRCA1P38398 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC21.96■■□□□ 1.11
BRCA1P38398 VN2R19P-201ENST00000442399 1052 ntBASIC21.96■■□□□ 1.11
BRCA1P38398 SLBP-205ENST00000488267 987 ntTSL 2 BASIC21.96■■□□□ 1.11
BRCA1P38398 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC21.96■■□□□ 1.11
BRCA1P38398 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC21.96■■□□□ 1.11
BRCA1P38398 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms