Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AL499627.1-201ENST00000569373 2188 ntBASIC18.88■□□□□ 0.61
HOXA9P31269 AC099343.3-201ENST00000605834 2503 ntBASIC18.88■□□□□ 0.61
HOXA9P31269 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXA9P31269 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.88■□□□□ 0.61
HOXA9P31269 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXA9P31269 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXA9P31269 AC021087.4-201ENST00000563761 564 ntBASIC18.88■□□□□ 0.61
HOXA9P31269 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.88■□□□□ 0.61
HOXA9P31269 AC139530.3-201ENST00000620344 690 ntBASIC18.88■□□□□ 0.61
HOXA9P31269 AL139288.1-201ENST00000623748 933 ntBASIC18.88■□□□□ 0.61
HOXA9P31269 AC116407.3-201ENST00000623905 1129 ntBASIC18.88■□□□□ 0.61
HOXA9P31269 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.88■□□□□ 0.61
HOXA9P31269 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HOXA9P31269 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HOXA9P31269 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
HOXA9P31269 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.88■□□□□ 0.61
HOXA9P31269 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.88■□□□□ 0.61
HOXA9P31269 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.88■□□□□ 0.61
HOXA9P31269 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
HOXA9P31269 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
HOXA9P31269 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.87■□□□□ 0.61
HOXA9P31269 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.87■□□□□ 0.61
HOXA9P31269 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
HOXA9P31269 SART3-203ENST00000546611 1184 ntBASIC18.87■□□□□ 0.61
HOXA9P31269 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.87■□□□□ 0.61
HOXA9P31269 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.87■□□□□ 0.61
HOXA9P31269 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.87■□□□□ 0.61
HOXA9P31269 AL356309.3-201ENST00000624132 1934 ntBASIC18.87■□□□□ 0.61
HOXA9P31269 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.87■□□□□ 0.61
HOXA9P31269 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
HOXA9P31269 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA9P31269 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA9P31269 AC116562.4-201ENST00000641316 2276 ntBASIC18.86■□□□□ 0.61
HOXA9P31269 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA9P31269 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXA9P31269 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXA9P31269 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXA9P31269 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA9P31269 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.86■□□□□ 0.61
HOXA9P31269 PMS2P7-201ENST00000506558 1336 ntBASIC18.86■□□□□ 0.61
HOXA9P31269 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.86■□□□□ 0.61
HOXA9P31269 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA9P31269 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
HOXA9P31269 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA9P31269 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA9P31269 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXA9P31269 AC145285.3-201ENST00000564603 959 ntBASIC18.86■□□□□ 0.61
HOXA9P31269 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA9P31269 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA9P31269 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
HOXA9P31269 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA9P31269 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA9P31269 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.86■□□□□ 0.61
HOXA9P31269 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.86■□□□□ 0.61
HOXA9P31269 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA9P31269 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HOXA9P31269 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA9P31269 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA9P31269 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA9P31269 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
HOXA9P31269 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA9P31269 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXA9P31269 AC097374.2-201ENST00000618617 1306 ntBASIC18.85■□□□□ 0.61
HOXA9P31269 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXA9P31269 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA9P31269 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXA9P31269 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
HOXA9P31269 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA9P31269 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXA9P31269 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.85■□□□□ 0.61
HOXA9P31269 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.85■□□□□ 0.61
HOXA9P31269 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.85■□□□□ 0.61
HOXA9P31269 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.85■□□□□ 0.61
HOXA9P31269 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXA9P31269 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.85■□□□□ 0.61
HOXA9P31269 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA9P31269 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.85■□□□□ 0.61
HOXA9P31269 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXA9P31269 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA9P31269 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA9P31269 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
HOXA9P31269 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.85■□□□□ 0.61
HOXA9P31269 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HOXA9P31269 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA9P31269 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HOXA9P31269 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms