Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 RBM17P1-201ENST00000453646 1190 ntBASIC13.89□□□□□ -0.19
HLA-DMBP28068 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
HLA-DMBP28068 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DMBP28068 OR6D1P-202ENST00000641007 5290 ntBASIC13.89□□□□□ -0.19
HLA-DMBP28068 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 AP000593.1-201ENST00000393668 712 ntBASIC13.88□□□□□ -0.19
HLA-DMBP28068 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 MIR3180-5-201ENST00000583743 153 ntBASIC13.88□□□□□ -0.19
HLA-DMBP28068 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 AP000525.1-201ENST00000608286 694 ntBASIC13.88□□□□□ -0.19
HLA-DMBP28068 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 STK4-201ENST00000372801 2038 ntTSL 2 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DMBP28068 UROS-202ENST00000368778 1556 ntTSL 2 BASIC13.88□□□□□ -0.19
HLA-DMBP28068 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC13.87□□□□□ -0.19
HLA-DMBP28068 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
HLA-DMBP28068 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC13.87□□□□□ -0.19
HLA-DMBP28068 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC13.87□□□□□ -0.19
HLA-DMBP28068 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC13.87□□□□□ -0.19
HLA-DMBP28068 LINC00896-202ENST00000609602 2128 ntBASIC13.87□□□□□ -0.19
HLA-DMBP28068 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
HLA-DMBP28068 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
HLA-DMBP28068 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
HLA-DMBP28068 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
HLA-DMBP28068 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DMBP28068 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
HLA-DMBP28068 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms